Skip to main content

Library for working with OBO Library Ontologies and associations

Project description

PyPI

ontobio - a python API for working with ontologies and associations

This module provides objects and utility methods for working with ontologies and associations of entities (genes, variants, etc) to ontology classes.

The ontologies and associations can either be local files or provided by remote services (currently the OntoBee SPARQL service for ontologies and a Monarch or GO Golr service for associations).

Documentation

Documentation is on readthedocs

Notebooks

See the Jupyter Notebooks for code examples

Mailing list

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

ontobio-1.4.6.tar.gz (128.1 kB view details)

Uploaded Source

Built Distributions

ontobio-1.4.6-py3.6.egg (166.7 kB view details)

Uploaded Source

ontobio-1.4.6-py3-none-any.whl (170.6 kB view details)

Uploaded Python 3

File details

Details for the file ontobio-1.4.6.tar.gz.

File metadata

  • Download URL: ontobio-1.4.6.tar.gz
  • Upload date:
  • Size: 128.1 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.11.0 pkginfo/1.4.2 requests/2.19.1 setuptools/28.8.0 requests-toolbelt/0.8.0 tqdm/4.26.0 CPython/3.6.4

File hashes

Hashes for ontobio-1.4.6.tar.gz
Algorithm Hash digest
SHA256 1802698cf09d41c0d84fa65b17941ac0664bb6c4c71ca709b6482c887c3cdc07
MD5 ad31f09b85f49922eee0597bf0db1038
BLAKE2b-256 37f13c11c5b7fff2662f6d1c4c4fba6b0a27810e91d319d089ef4a5fa755919e

See more details on using hashes here.

Provenance

File details

Details for the file ontobio-1.4.6-py3.6.egg.

File metadata

  • Download URL: ontobio-1.4.6-py3.6.egg
  • Upload date:
  • Size: 166.7 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.11.0 pkginfo/1.4.2 requests/2.19.1 setuptools/28.8.0 requests-toolbelt/0.8.0 tqdm/4.26.0 CPython/3.6.4

File hashes

Hashes for ontobio-1.4.6-py3.6.egg
Algorithm Hash digest
SHA256 976baa5ecf21fb3b455186e17e6cae8d78081f6e34061dd46bab12153eeb8bea
MD5 5d1a28323f161fd82e1309968016b238
BLAKE2b-256 37e291bd16072d5e0898040c549cb772d5188f31e6540d93d7e778b12861192c

See more details on using hashes here.

Provenance

File details

Details for the file ontobio-1.4.6-py3-none-any.whl.

File metadata

  • Download URL: ontobio-1.4.6-py3-none-any.whl
  • Upload date:
  • Size: 170.6 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.11.0 pkginfo/1.4.2 requests/2.19.1 setuptools/28.8.0 requests-toolbelt/0.8.0 tqdm/4.26.0 CPython/3.6.4

File hashes

Hashes for ontobio-1.4.6-py3-none-any.whl
Algorithm Hash digest
SHA256 154c631699f0b868436f868d3fc8679eea943230185f556756a1579fa1b2a294
MD5 4ca066b71b55ee84e65926b3def55a25
BLAKE2b-256 2a49c9a488c5d4bef66f2132a0d20552a8826a0a3d0b9a0e67de057410193d48

See more details on using hashes here.

Provenance

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page