Library for working with OBO Library Ontologies and associations

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for cmungall from gravatar.com cmungall Avatar for deepakunni3 from gravatar.com deepakunni3 Avatar for dustine32 from gravatar.com dustine32 Avatar for kltm from gravatar.com kltm Avatar for mugitty from gravatar.com mugitty Avatar for smoxon from gravatar.com smoxon

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: BSD License (BSD)
  • Author: Chris Mungall
  • Tags ontology, graph, obo, owl, sparql, networkx, network
Classifiers

Project description

PyPI

ontobio - a python API for working with ontologies and associations

This module provides objects and utility methods for working with ontologies and associations of entities (genes, variants, etc) to ontology classes.

The ontologies and associations can either be local files or provided by remote services (currently the OntoBee SPARQL service for ontologies and a Monarch or GO Golr service for associations).

Documentation

Documentation is on readthedocs

Notebooks

See the Jupyter Notebooks for code examples

Mailing list

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for cmungall from gravatar.com cmungall Avatar for deepakunni3 from gravatar.com deepakunni3 Avatar for dustine32 from gravatar.com dustine32 Avatar for kltm from gravatar.com kltm Avatar for mugitty from gravatar.com mugitty Avatar for smoxon from gravatar.com smoxon

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: BSD License (BSD)
  • Author: Chris Mungall
  • Tags ontology, graph, obo, owl, sparql, networkx, network
Classifiers

Release history Release notifications | RSS feed

2.9.10

2.9.9

2.9.8

2.9.7

2.9.6

2.9.3

2.9.2

2.9.1

2.9.0

2.8.25

2.8.24

2.8.23

2.8.22

2.8.21

2.8.20

2.8.19

2.8.18

2.8.17

2.8.16

2.8.15

2.8.14

2.8.13

2.8.12

2.8.11

2.8.10

2.8.9

2.8.8

2.8.7

2.8.6

2.8.5

2.8.4

2.8.3

2.8.2

2.8.1

2.8.0

2.7.17

2.7.16

2.7.15

2.7.14

2.7.13

2.7.12

2.7.11

2.7.10

2.7.9

2.7.8

2.7.7

2.7.6

2.7.5

2.7.4

2.7.3

2.7.2

2.7.2rc0 pre-release

2.7.1

2.7.0

2.6.4

2.6.3

2.6.2

2.6.1

2.6.0

2.5.1

2.5.0

2.4.1

2.4.0

2.3.0

2.2.0rc0 pre-release

2.1.2

This version

2.1.1

2.1.0

2.0.0

2.0.0rc9 pre-release

2.0.0rc8 pre-release

2.0.0rc7 pre-release

2.0.0rc6 pre-release

2.0.0rc5 pre-release

2.0.0rc4 pre-release

2.0.0rc3 pre-release

2.0.0rc2 pre-release

2.0.0rc1 pre-release

2.0.0rc0 pre-release

1.20.1

1.20.0

1.19.3

1.19.2

1.19.0

1.18.1

1.18.0

1.17.5

1.17.4

1.17.3

1.17.2

1.17.1

1.17.0

1.16.2

1.16.1

1.16.0

1.15.8

1.15.7

1.15.6

1.15.5

1.15.4

1.15.3

1.15.2

1.15.1

1.15.0

1.14.0

1.13.2

1.13.1

1.13.0

1.12.1

1.12.0

1.11.4

1.11.3

1.11.2

1.11.1

1.11.0

1.10.52

1.10.51

1.10.5

1.10.4

1.10.3

1.10.2

1.10.1

1.10.0

1.9.4

1.9.3

1.9.2

1.9.1

1.9.0

1.8.0

1.7.2

1.7.1

1.7.0

1.6.3

1.6.2

1.6.1

1.6.0

1.5.2

1.5.1

1.5.0

1.4.7

1.4.6

1.4.5

1.4.4

1.4.3

1.4.2

1.4.1

1.4.0

1.3.1

1.3.0

1.2.4

1.2.3

1.1.4

1.1.3

1.1.2

1.1.1

1.1.0

1.0.4

1.0.3

1.0.2

1.0.1

1.0.0

0.2.37

0.2.36

0.2.35

0.2.34

0.2.33

0.2.32

0.2.31

0.2.30

0.2.29

0.2.28

0.2.27

0.2.26

0.2.25

0.2.24

0.2.23

0.2.22

0.2.21

0.2.20

0.2.19

0.2.18

0.2.17

0.2.16

0.2.15

0.2.14

0.2.13

0.2.12

0.2.11

0.2.10

0.2.9

0.2.8

0.2.7

0.2.6

0.2.5

0.2.4

0.2.3

0.2.2

0.2.1

0.1.6

0.1.5

0.1.4

0.1.3

0.1.2

0.1.1

0.1.0

0.0.0

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

ontobio-2.1.1.tar.gz (186.5 kB view details)

Uploaded Source

Built Distributions

ontobio-2.1.1-py3.6.egg (231.5 kB view details)

Uploaded Source

ontobio-2.1.1-py3-none-any.whl (237.4 kB view details)

Uploaded Python 3

File details

Details for the file ontobio-2.1.1.tar.gz.

File metadata

  • Download URL: ontobio-2.1.1.tar.gz
  • Upload date:
  • Size: 186.5 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.2.0 pkginfo/1.6.1 requests/2.25.0 setuptools/39.0.1 requests-toolbelt/0.9.1 tqdm/4.54.0 CPython/3.6.9

File hashes

Hashes for ontobio-2.1.1.tar.gz
Algorithm Hash digest
SHA256 b323d449e2c46705f883107bd7617b94b2f8dfdbdb5b69b463d9e5753772bfe6
MD5 717ef3b190b9fea53b2fb12daecd3029
BLAKE2b-256 1ef48235dc81d7315d3223364ae25d7773c11f9b5150a58400390f961f7f9c8d

See more details on using hashes here.

Provenance

File details

Details for the file ontobio-2.1.1-py3.6.egg.

File metadata

  • Download URL: ontobio-2.1.1-py3.6.egg
  • Upload date:
  • Size: 231.5 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.2.0 pkginfo/1.6.1 requests/2.25.0 setuptools/39.0.1 requests-toolbelt/0.9.1 tqdm/4.54.0 CPython/3.6.9

File hashes

Hashes for ontobio-2.1.1-py3.6.egg
Algorithm Hash digest
SHA256 200df43a0fb649f59e382c31075f3fc6922b5b28d3cda9d94c892c7959226290
MD5 7d9c9a35db637604ba3a173c6d2c1b0b
BLAKE2b-256 45b5be983008e6ce92000605c22319b296f62748400693891959b143095b8ce7

See more details on using hashes here.

Provenance

File details

Details for the file ontobio-2.1.1-py3-none-any.whl.

File metadata

  • Download URL: ontobio-2.1.1-py3-none-any.whl
  • Upload date:
  • Size: 237.4 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.2.0 pkginfo/1.6.1 requests/2.25.0 setuptools/39.0.1 requests-toolbelt/0.9.1 tqdm/4.54.0 CPython/3.6.9

File hashes

Hashes for ontobio-2.1.1-py3-none-any.whl
Algorithm Hash digest
SHA256 32ab80d78723de196316df74b3ce00feef98ac2a51dba1ff15bbb08f65df3e00
MD5 d120cac80501781ff80d41427f96cf44
BLAKE2b-256 14bb367e5cb15eee95d71495c21818b02a9e2444412a74996307d4f276d5a6c8

See more details on using hashes here.

Provenance

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page