Skip to main content

Library for working with OBO Library Ontologies and associations

Project description

PyPI

ontobio - a python API for working with ontologies and associations

This module provides objects and utility methods for working with ontologies and associations of entities (genes, variants, etc) to ontology classes.

The ontologies and associations can either be local files or provided by remote services (currently the OntoBee SPARQL service for ontologies and a Monarch or GO Golr service for associations).

Documentation

Documentation is on readthedocs

Notebooks

See the Jupyter Notebooks for code examples

Mailing list

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

ontobio-2.7.13.tar.gz (238.9 kB view details)

Uploaded Source

Built Distributions

ontobio-2.7.13-py3.6.egg (298.1 kB view details)

Uploaded Source

ontobio-2.7.13-py3-none-any.whl (305.0 kB view details)

Uploaded Python 3

File details

Details for the file ontobio-2.7.13.tar.gz.

File metadata

  • Download URL: ontobio-2.7.13.tar.gz
  • Upload date:
  • Size: 238.9 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.2 importlib_metadata/4.8.1 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.6.5

File hashes

Hashes for ontobio-2.7.13.tar.gz
Algorithm Hash digest
SHA256 c307a4d0b5c260db6cc17aa959f7c8910d0a14e722ff5df479576a2616e96aa8
MD5 c60d5be6972cb30bfeb36c3af022ccb4
BLAKE2b-256 15f1246a112ab927e76d8e67252acdbbd3818c79ac969f5decbcbf8119889cce

See more details on using hashes here.

Provenance

File details

Details for the file ontobio-2.7.13-py3.6.egg.

File metadata

  • Download URL: ontobio-2.7.13-py3.6.egg
  • Upload date:
  • Size: 298.1 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.2 importlib_metadata/4.8.1 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.6.5

File hashes

Hashes for ontobio-2.7.13-py3.6.egg
Algorithm Hash digest
SHA256 aeab13c2989d0a0db08ff37b9c6cf2b2447080406116d109f2107b6e280c4755
MD5 2dafb63683145414833f1288b2f19356
BLAKE2b-256 84ac397b8476f312bb67b51e471ac10d2f393adf4f8ea17958bc67afa2d5e90b

See more details on using hashes here.

Provenance

File details

Details for the file ontobio-2.7.13-py3-none-any.whl.

File metadata

  • Download URL: ontobio-2.7.13-py3-none-any.whl
  • Upload date:
  • Size: 305.0 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.2 importlib_metadata/4.8.1 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.6.5

File hashes

Hashes for ontobio-2.7.13-py3-none-any.whl
Algorithm Hash digest
SHA256 2dfcaa73884e86a8df6ebea74d4abda52089b6fa6a19a46101368ffc877af2f9
MD5 e37b55b4aa21e035523e0b0c5e4b5090
BLAKE2b-256 75c59b9d51af0b111dafa2a7d529dcbb33e17b24e6f7fc74d145b2d2df5cafac

See more details on using hashes here.

Provenance

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page