Library for working with OBO Library Ontologies and associations

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for cmungall from gravatar.com cmungall Avatar for deepakunni3 from gravatar.com deepakunni3 Avatar for dustine32 from gravatar.com dustine32 Avatar for kltm from gravatar.com kltm Avatar for mugitty from gravatar.com mugitty Avatar for smoxon from gravatar.com smoxon

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: BSD License (BSD)
  • Author: Chris Mungall
  • Tags ontology, graph, obo, owl, sparql, networkx, network
Classifiers

Project description

PyPI

ontobio - a python API for working with ontologies and associations

This module provides objects and utility methods for working with ontologies and associations of entities (genes, variants, etc) to ontology classes.

The ontologies and associations can either be local files or provided by remote services (currently the OntoBee SPARQL service for ontologies and a Monarch or GO Golr service for associations).

Documentation

Documentation is on readthedocs

Notebooks

See the Jupyter Notebooks for code examples

Mailing list

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for cmungall from gravatar.com cmungall Avatar for deepakunni3 from gravatar.com deepakunni3 Avatar for dustine32 from gravatar.com dustine32 Avatar for kltm from gravatar.com kltm Avatar for mugitty from gravatar.com mugitty Avatar for smoxon from gravatar.com smoxon

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: BSD License (BSD)
  • Author: Chris Mungall
  • Tags ontology, graph, obo, owl, sparql, networkx, network
Classifiers

Release history Release notifications | RSS feed

2.9.10

2.9.9

2.9.8

2.9.7

2.9.6

2.9.3

2.9.2

2.9.1

2.9.0

2.8.25

2.8.24

2.8.23

2.8.22

2.8.21

2.8.20

2.8.19

2.8.18

2.8.17

2.8.16

2.8.15

2.8.14

2.8.13

2.8.12

2.8.11

2.8.10

2.8.9

2.8.8

2.8.7

2.8.6

2.8.5

2.8.4

2.8.3

2.8.2

2.8.1

2.8.0

2.7.17

2.7.16

2.7.15

2.7.14

2.7.13

2.7.12

2.7.11

2.7.10

2.7.9

2.7.8

2.7.7

2.7.6

2.7.5

2.7.4

This version

2.7.3

2.7.2

2.7.2rc0 pre-release

2.7.1

2.7.0

2.6.4

2.6.3

2.6.2

2.6.1

2.6.0

2.5.1

2.5.0

2.4.1

2.4.0

2.3.0

2.2.0rc0 pre-release

2.1.2

2.1.1

2.1.0

2.0.0

2.0.0rc9 pre-release

2.0.0rc8 pre-release

2.0.0rc7 pre-release

2.0.0rc6 pre-release

2.0.0rc5 pre-release

2.0.0rc4 pre-release

2.0.0rc3 pre-release

2.0.0rc2 pre-release

2.0.0rc1 pre-release

2.0.0rc0 pre-release

1.20.1

1.20.0

1.19.3

1.19.2

1.19.0

1.18.1

1.18.0

1.17.5

1.17.4

1.17.3

1.17.2

1.17.1

1.17.0

1.16.2

1.16.1

1.16.0

1.15.8

1.15.7

1.15.6

1.15.5

1.15.4

1.15.3

1.15.2

1.15.1

1.15.0

1.14.0

1.13.2

1.13.1

1.13.0

1.12.1

1.12.0

1.11.4

1.11.3

1.11.2

1.11.1

1.11.0

1.10.52

1.10.51

1.10.5

1.10.4

1.10.3

1.10.2

1.10.1

1.10.0

1.9.4

1.9.3

1.9.2

1.9.1

1.9.0

1.8.0

1.7.2

1.7.1

1.7.0

1.6.3

1.6.2

1.6.1

1.6.0

1.5.2

1.5.1

1.5.0

1.4.7

1.4.6

1.4.5

1.4.4

1.4.3

1.4.2

1.4.1

1.4.0

1.3.1

1.3.0

1.2.4

1.2.3

1.1.4

1.1.3

1.1.2

1.1.1

1.1.0

1.0.4

1.0.3

1.0.2

1.0.1

1.0.0

0.2.37

0.2.36

0.2.35

0.2.34

0.2.33

0.2.32

0.2.31

0.2.30

0.2.29

0.2.28

0.2.27

0.2.26

0.2.25

0.2.24

0.2.23

0.2.22

0.2.21

0.2.20

0.2.19

0.2.18

0.2.17

0.2.16

0.2.15

0.2.14

0.2.13

0.2.12

0.2.11

0.2.10

0.2.9

0.2.8

0.2.7

0.2.6

0.2.5

0.2.4

0.2.3

0.2.2

0.2.1

0.1.6

0.1.5

0.1.4

0.1.3

0.1.2

0.1.1

0.1.0

0.0.0

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

ontobio-2.7.3.tar.gz (231.5 kB view details)

Uploaded Source

Built Distributions

ontobio-2.7.3-py3.6.egg (284.2 kB view details)

Uploaded Source

ontobio-2.7.3-py3-none-any.whl (290.7 kB view details)

Uploaded Python 3

File details

Details for the file ontobio-2.7.3.tar.gz.

File metadata

  • Download URL: ontobio-2.7.3.tar.gz
  • Upload date:
  • Size: 231.5 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.1 importlib_metadata/3.10.1 pkginfo/1.7.0 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.60.0 CPython/3.6.5

File hashes

Hashes for ontobio-2.7.3.tar.gz
Algorithm Hash digest
SHA256 73a7c9fce72533db4fafb4ddaba64f068ffd3ee8c4adb970a3855c4d6d442cb3
MD5 aa8b6062bd84b70d611a90c09c06355f
BLAKE2b-256 c31bec7bb951fda5d950e2e7246df2516af05da1b83bc435bf9ac2c9b561dad8

See more details on using hashes here.

Provenance

File details

Details for the file ontobio-2.7.3-py3.6.egg.

File metadata

  • Download URL: ontobio-2.7.3-py3.6.egg
  • Upload date:
  • Size: 284.2 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.1 importlib_metadata/3.10.1 pkginfo/1.7.0 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.60.0 CPython/3.6.5

File hashes

Hashes for ontobio-2.7.3-py3.6.egg
Algorithm Hash digest
SHA256 e42a10c2775a7db91ed9af6b53d20aac77a02778437970fa6742bd9dd9f124b9
MD5 e9c7de32555aff533f65a12ff9f90979
BLAKE2b-256 bc7f9a03d3779f1ec9702e53099ce8ec3477e1e5ed95b267479b453686e2dd2d

See more details on using hashes here.

Provenance

File details

Details for the file ontobio-2.7.3-py3-none-any.whl.

File metadata

  • Download URL: ontobio-2.7.3-py3-none-any.whl
  • Upload date:
  • Size: 290.7 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.1 importlib_metadata/3.10.1 pkginfo/1.7.0 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.60.0 CPython/3.6.5

File hashes

Hashes for ontobio-2.7.3-py3-none-any.whl
Algorithm Hash digest
SHA256 7e95c70ec3ed2e86e1c29080de609723bebbe5612922825aa9958f3059baf7b1
MD5 06e501c98986686e430d5516ef9763b8
BLAKE2b-256 336b5ccddaae109a04beba9d9079ca30e543998dd89df56f17c2fa4f442eb3d1

See more details on using hashes here.

Provenance

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page