Skip to main content

Simple python toolbox to analyse physio signals (respi and ECG)

Project description

physio

Simple python toolbox to analyse physio signals (Respiration, ECG, and RSA)

Please jump to documentation now https://physio.readthedocs.io

Manuscript

This work has been published at eNeuro : https://www.eneuro.org/content/10/10/ENEURO.0197-23.2023

Features

  • respiration cycle detection
  • respiration cycle features (amplitude, duration, volumes ...)
  • simple preprocess on signal : filter using scipy and smoothing
  • ecg peak detection
  • ecg/hrv metrics (time domain and freq domain)
  • rsa : new approach to get cycle-per-cycle metrics
  • cyclic deformation machinery : a simple strecher of any signal to cycle template
  • simple reader of micromed and brainvision using neo
  • "automagic" parameters for differents species

## Installation from PyPi

pip install physio

## Installation from source

git clone https://github.com/samuelgarcia/physio.git
cd physio
pip install -e .

Update:

cd physio
git pull origin main

Authors

Samuel Garcia with the help of Valentin Ghibaudo and Jules Granget

This toolbox is used in the CMO team from the CRNL.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

physio-0.2.0.tar.gz (19.0 kB view details)

Uploaded Source

Built Distribution

physio-0.2.0-py3-none-any.whl (20.2 kB view details)

Uploaded Python 3

File details

Details for the file physio-0.2.0.tar.gz.

File metadata

  • Download URL: physio-0.2.0.tar.gz
  • Upload date:
  • Size: 19.0 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/4.0.2 CPython/3.10.13

File hashes

Hashes for physio-0.2.0.tar.gz
Algorithm Hash digest
SHA256 be4a1598e4844000cde346e2632cc8a5367951691d3b6e0494772bdcba3a38d7
MD5 866cd0a5de3d98da0240cf9c0ea249a5
BLAKE2b-256 9966e926a333463ef48ea03290c6db2268cabacd2dc84d4c988af26b60c3a122

See more details on using hashes here.

Provenance

File details

Details for the file physio-0.2.0-py3-none-any.whl.

File metadata

  • Download URL: physio-0.2.0-py3-none-any.whl
  • Upload date:
  • Size: 20.2 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/4.0.2 CPython/3.10.13

File hashes

Hashes for physio-0.2.0-py3-none-any.whl
Algorithm Hash digest
SHA256 b85872e64c74cff0cbd6090c5901ca275c71160162603bd4869cadf6acec1279
MD5 14ec59d3b9203a374533731c8b7a0112
BLAKE2b-256 d0a518c508babcbe5241b9fd6232178a1984d4a148494d546cc3c99ce773cc68

See more details on using hashes here.

Provenance

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page