Simple python toolbox to analyse physio signals (respi and ECG)
Project description
physio
Simple python toolbox to analyse physio signals (Respiration, ECG, and RSA)
Please jump to documentation now https://physio.readthedocs.io
Manuscript
This work has been published at eNeuro : https://www.eneuro.org/content/10/10/ENEURO.0197-23.2023
Features
- respiration cycle detection
- respiration cycle features (amplitude, duration, volumes ...)
- simple preprocess on signal : filter using scipy and smoothing
- ecg peak detection
- ecg/hrv metrics (time domain and freq domain)
- rsa : new approach to get cycle-per-cycle metrics
- cyclic deformation machinery : a simple strecher of any signal to cycle template
- simple reader of micromed and brainvision using neo
- "automagic" parameters for differents species
## Installation from PyPi
pip install physio
## Installation from source
git clone https://github.com/samuelgarcia/physio.git
cd physio
pip install -e .
Update:
cd physio
git pull origin main
Authors
Samuel Garcia with the help of Valentin Ghibaudo and Jules Granget
This toolbox is used in the CMO team from the CRNL.
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