Skip to main content

Compute minimal metabolic precursors sets that enable the production of target metabolites.

Project description

Installation
============

You can install precursor by running::

$ pip install --user precursor


Usage
=====

Typical usage is::

$ precursor.py --autoseeds network targets

For more options you can ask for help as follows::

$ precursor.py --help
usage: precursor.py [-h] [--autoseeds] net inputs

positional arguments:
net metabolic network in SBML format
inputs targets in XML format

optional arguments:
-h, --help show this help message and exit
--autoseeds compute possible seed metabolites


Samples
=======

An archive with sample files is available here:
precursor_data.tar.gz_

.. _precursor_data.tar.gz: http://www.cs.uni-potsdam.de/~sthiele/bioasp/downloads/samples/precursor_data.tar.gz

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

precursor-1.1.tar.gz (336.3 kB view details)

Uploaded Source

File details

Details for the file precursor-1.1.tar.gz.

File metadata

  • Download URL: precursor-1.1.tar.gz
  • Upload date:
  • Size: 336.3 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No

File hashes

Hashes for precursor-1.1.tar.gz
Algorithm Hash digest
SHA256 125f35bc3266c04bd4a8cebd477df7cc748d0f73255fbb730823926b46b20746
MD5 21630fa6e6da139de5953080a33159a8
BLAKE2b-256 834b2ced9b621fd7b27d288ec1fc73262e06d96c961fa99cd19a987cc3109882

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page