Skip to main content

Compute minimal metabolic precursors sets that enable the production of target metabolites.

Project description

Installation
============

You can install precursor by running::

$ pip install --user precursor


Usage
=====

Typical usage is::

$ precursor.py --autoseeds network targets

For more options you can ask for help as follows::

$ precursor.py --help
usage: precursor.py [-h] [--autoseeds] net inputs

positional arguments:
net metabolic network in SBML format
inputs targets in XML format

optional arguments:
-h, --help show this help message and exit
--autoseeds compute possible seed metabolites


Samples
=======

An archive with sample files is available here:
precursor_data.tar.gz_

.. _precursor_data.tar.gz: http://bioasp.github.io/downloads/samples/precursor_data.tar.gz

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

precursor-1.2.tar.gz (6.4 kB view details)

Uploaded Source

File details

Details for the file precursor-1.2.tar.gz.

File metadata

  • Download URL: precursor-1.2.tar.gz
  • Upload date:
  • Size: 6.4 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No

File hashes

Hashes for precursor-1.2.tar.gz
Algorithm Hash digest
SHA256 829bb0e685243747740c28db2884ed9a1149354555da1b950b0e7e653f70e52d
MD5 48e91b67775106a68775f56b0c4a5521
BLAKE2b-256 70a5666e0d6afb9567fd901b997868473f847ef3741f155aa7d7e1a1a18d767f

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page