Library for working prefixcommons.org CURIEs
Project description
prefixcommons
A python API for working with ID prefixes in the context of prefixcommons
Current functionality: Uses JSON-LD contexts to expand and contract CURIEs to URIs
E.g. GO:0008150 <=> http://purl.obolibrary.org/obo/GO_0008150
Example
>>> from prefixcommons import contract_uri >>> print(contract_uri('http://purl.obolibrary.org/obo/GO_0008150')) GO:0008150 >>> from prefixcommons import expand_uri >>> print(expand_uri('GOL0008150')) http://purl.obolibrary.org/obo/GO_0008150
The above uses standard JSON-LD context files from prefixcommons/biocontext
You can pass your own
>>> cmaps = [{'GO': 'http://purl.obolibrary.org/obo/GO_'}] >>> print(contract_uri('http://purl.obolibrary.org/obo/GO_0008150'), cmaps) GO:0008150
You can also use a pre-defined context from biocontexts
>>> from prefixcommons import read_biocontext >>> ctxt = read_biocontext('translator_context') >>> print(contract_uri('http://purl.obolibrary.org/obo/GO_0008150'), [ctxt]) GO:0008150
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