Python package to handle probe layout, geometry and wiring to device.
Project description
probeinterface
Python package to handle probe layout, geometry and wiring to device.
Documentation : https://probeinterface.readthedocs.io/
Goal
Make a ligthweigted package usefull that handle:
- probe geometry (2d, 3d electrode layout)
- probe shape (contour of the probe, shape of channel contact, ...)
- probe wiring to device (channel are not in order generaly)
- combinaison of several probe : global geometry + global wiring
- propose a new format based on JSON
- handle a collection of existing probe (neuronexus, imec, cambridge neurotech...) Started here
Bonus :
- optional ploting with matplotlib include
- load/save from/into several possible formats (PRB format, csv format, NWB format , ...)
- handle SI correctly um/mm/...
Target users/projet :
- spikeinterface team : integrate this into spikeextractor for channel location
- neo team : handle array_annotations for AnalogSignal
- spikeforest team : use this package for ploting probe activity
- phy team: integrate for probe display
- spyking-circus team : handle probe with this package
- kilosort team : handle probe with this package
- tridesclous team : handle probe with this package
Author: Samuel Garcia
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