A package for building BEL resource files with the EBI Ontology Lookup Service.
Project description
A PyBEL [1] extension for building BEL resources with the EBI [2] Ontology Lookup Service.
Installation 
Get the Latest
Download the most recent code from GitHub with:
$ pip install git+https://github.com/pybel/pybel-ols.gitFor Developers
Clone the repository from GitHub and install in editable mode with:
$ git clone https://github.com/pybel/pybel-ols.git
$ cd pybel-ols
$ pip install -e .Getting Started
The main goal is to generate a namespace file. For example, to generate a namespace for the Human Phenotype Ontology, abbreviated with the prefix hp, the following command can be used:
$ pybel-ols namespace_from_ols hp --encoding "O" --output ~/Desktop/hp.belnsWhere --encoding "O" tells it that all terms in this ontology correspond to the pathology/phenotype BEL type.
Alternatively, the ‘-b’ option can be used to specify an alternate OLS instance
$ pybel-ols namespace_from_ols hp --encoding O --output ~/Desktop/hp.belns -b https://localhost/olsReferences
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Hashes for pybel_ols-0.0.1-py3-none-any.whl
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