Pydra tasks for FreeSurfer
Project description
pydra-freesurfer
Pydra tasks for FreeSurfer.
Pydra is a dataflow engine which provides a set of lightweight abstractions for DAG construction, manipulation, and distributed execution.
FreeSurfer is a neuroimaging toolkit for processing, analyzing, and visualizing human brain MR images.
This project exposes some of FreeSurfer's utilities as Pydra tasks to facilitate their incorporation into more advanced processing workflows.
Available interfaces
- gtmseg
- mri_convert
- mri_surf2surf
- mri_vol2vol
- mris_expand
- mris_preproc
- recon-all
- tkregister2
Development
This project is managed using Poetry.
To install, check and test the code:
make
To run the test suite when hacking:
make test
To format the code before review:
make format
To build the project's documentation:
make docs
Licensing
This project is released under the terms of the Apache License 2.0.
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