Pydra tasks for FSL
Project description
pydra-fsl
Pydra tasks for FSL.
Pydra is a dataflow engine which provides a set of lightweight abstractions for DAG construction, manipulation, and distributed execution.
FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.
Table of contents
Available tasks
Module | Tasks |
---|---|
bet | BET, RobustFOV |
eddy | Eddy |
fast | FAST |
flirt | FLIRT, ApplyXFM, ConcatXFM, ConvertXFM, InvertXFM |
fnirt | FNIRT, ApplyWarp, ConvertWarp, InvWarp |
susan | SUSAN |
utils | fslmaths, fslmerge, fslreorient2std, fslroi |
Installation
pip install pydra-fsl
A separate installation of FSL is required to use this package. Please review the FSL installation instructions and licensing details.
Development
This project is managed with Hatch:
pipx install hatch
To run the test suite:
hatch run test:no-cov
To fix linting issues:
hatch run lint:fix
License
pydra-fsl
is distributed under the terms of the Apache License, Version 2.0.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
File details
Details for the file pydra_fsl-0.0.10.tar.gz
.
File metadata
- Download URL: pydra_fsl-0.0.10.tar.gz
- Upload date:
- Size: 18.1 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.1 CPython/3.11.2
File hashes
Algorithm | Hash digest | |
---|---|---|
SHA256 | 6e5b8dcc038347b447b7b8636054c21507f4c90c35fea765f7c8685d26086f75 |
|
MD5 | c468998d7fa8105e51b7becd7ab8a873 |
|
BLAKE2b-256 | 871d4f6468847176e9e254c87f16a61978e19e450a562c222137cf16550dd811 |
Provenance
File details
Details for the file pydra_fsl-0.0.10-py3-none-any.whl
.
File metadata
- Download URL: pydra_fsl-0.0.10-py3-none-any.whl
- Upload date:
- Size: 27.5 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.1 CPython/3.11.2
File hashes
Algorithm | Hash digest | |
---|---|---|
SHA256 | 304c7703fa75299b202bf170fd3b7f2af0b156a3f16ffdff483633f966bb721a |
|
MD5 | 5a4c37de749deb09ba9221340dea521c |
|
BLAKE2b-256 | 092b53175d66ed351df429567a43879cb1a89e6097e7ec8cd4d51e810db8ad9a |