Skip to main content

Pydra tasks for FSL

Project description

pydra-fsl

PyPI - Version PyPI - Python Version PyPI - Downloads


Pydra tasks for FSL.

Pydra is a dataflow engine which provides a set of lightweight abstractions for DAG construction, manipulation, and distributed execution.

FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.

Table of contents

Available tasks

Module Tasks
bet BET, RobustFOV
eddy Eddy
fast FAST
flirt FLIRT, ApplyXFM, ConcatXFM, ConvertXFM, InvertXFM, Img2ImgCoord, Img2StdCoord, Std2ImgCoord
fnirt FNIRT, FNIRTFileUtils, ApplyWarp, ConvertWarp, InvWarp
fugue FUGUE
susan SUSAN
utils fslmaths, FSLROI, FSLInfo, FSLMerge, FSLReorient2Std, FSLSlice, FSLSplit

Installation

pip install pydra-fsl

A separate installation of FSL is required to use this package. Please review the FSL installation instructions and licensing details.

Development

This project is managed with Hatch:

pipx install hatch

To run the test suite:

hatch run test:no-cov

To fix linting issues:

hatch run lint:fix

License

pydra-fsl is distributed under the terms of the Apache License, Version 2.0.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

pydra_fsl-0.0.12.tar.gz (21.9 kB view details)

Uploaded Source

Built Distribution

pydra_fsl-0.0.12-py3-none-any.whl (35.9 kB view details)

Uploaded Python 3

File details

Details for the file pydra_fsl-0.0.12.tar.gz.

File metadata

  • Download URL: pydra_fsl-0.0.12.tar.gz
  • Upload date:
  • Size: 21.9 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/4.0.1 CPython/3.11.3

File hashes

Hashes for pydra_fsl-0.0.12.tar.gz
Algorithm Hash digest
SHA256 db4c177aa7eb08caf910a9cba41711829aed69e4e4001ccfac9242b56b630f8a
MD5 bd4222442b0ceb23889fbd923e301f08
BLAKE2b-256 cf92d881b7ad90e08a07d90cdc4981470c1192ca6bf323ab2e357e8da0e41a0e

See more details on using hashes here.

Provenance

File details

Details for the file pydra_fsl-0.0.12-py3-none-any.whl.

File metadata

  • Download URL: pydra_fsl-0.0.12-py3-none-any.whl
  • Upload date:
  • Size: 35.9 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/4.0.1 CPython/3.11.3

File hashes

Hashes for pydra_fsl-0.0.12-py3-none-any.whl
Algorithm Hash digest
SHA256 c98c51c012a9d05aebfa4ac1fefc0e5c3d5d0c0ef80d0bdaec36456f1b420bcb
MD5 a73d7b5abf93ca8e24d5c4fe86e53475
BLAKE2b-256 ed4de913d61f858bce854c0668f83179fd9108de95041a366837212d84254beb

See more details on using hashes here.

Provenance

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page