Pydra tasks for FSL
Project description
pydra-fsl
Pydra tasks for FSL.
Pydra is a dataflow engine which provides a set of lightweight abstractions for DAG construction, manipulation, and distributed execution.
FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.
Table of contents
Available tasks
Module | Tasks |
---|---|
bet | BET, RobustFOV |
eddy | Eddy |
fast | FAST |
flirt | FLIRT, ApplyXFM, ConcatXFM, ConvertXFM, InvertXFM, Img2ImgCoord, Img2StdCoord, Std2ImgCoord |
fnirt | FNIRT, FNIRTFileUtils, ApplyWarp, ConvertWarp, InvWarp |
fugue | FUGUE |
susan | SUSAN |
utils | fslmaths, FSLFFT, FSLROI, FSLChFileType, FSLInfo, FSLInterleave, FSLMerge, FSLReorient2Std, FSLSelectVols, FSLSlice, FSLSmoothFill, FSLSplit, FSLSwapDim |
Installation
pip install pydra-fsl
A separate installation of FSL is required to use this package. Please review the FSL installation instructions and licensing details.
Development
This project is managed with Hatch:
pipx install hatch
To run the test suite:
hatch run test
To fix linting issues:
hatch run lint:fix
License
This project is distributed under the terms of the Apache License, Version 2.0.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
pydra_fsl-0.0.14.tar.gz
(23.6 kB
view hashes)
Built Distribution
pydra_fsl-0.0.14-py3-none-any.whl
(40.9 kB
view hashes)
Close
Hashes for pydra_fsl-0.0.14-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 140bbf8f8ccaa35006a273098058be76c19e4b69d0c981e0ffc950cf36971380 |
|
MD5 | 611a49382999025a5f453671ed4c4041 |
|
BLAKE2b-256 | f60c79a8de724bbeda31b6a9f94275cb816bbf736edfad8dacd0896077f03d55 |