Pydra tasks for FSL
Project description
pydra-fsl
Pydra tasks for FSL.
Pydra is a dataflow engine which provides a set of lightweight abstractions for DAG construction, manipulation, and distributed execution.
FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.
Table of contents
Available interfaces
- bet
- bet
- robustfov
- eddy
- fast
- flirt
- flirt
- apply_xfm
- concat_xfm
- convert_xfm
- invert_xfm
- fnirt
- susan
- utils
- fslmaths
- fslmerge
- fslreorient2std
- fslroi
Installation
pip install pydra-fsl
A separate installation of FSL is required to use this package. Please review the FSL installation instructions and licensing details.
Development
This project is managed with Hatch:
pipx install hatch
To run the test suite:
hatch run test:no-cov
To fix linting issues:
hatch run lint:fix
License
pydra-fsl is distributed under the terms of the Apache License, Version 2.0.
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