Nipype 1 Tasks for Pydra

Pydra is a redesign of the Nipype dataflow engine, and the core of the emerging Nipype 2 ecosystem.

This is a task package, a set of Pydra Tasks that inhabits the pydra.tasks.* namespace, to ease wrapping Nipype 1 Interfaces.

Additional tools for migrating from Nipype 1 to Pydra may find their home here.

Installation

pip install pydra-nipype1

Usage

from pydra.tasks.nipype1.utils import Nipype1Task
from nipype.interfaces import fsl

thresh = Nipype1Task(fsl.Threshold())
res = thresh(in_file=fname, thresh=0.5)

For developers

Install repo in developer mode from the source directory. It is also useful to install pre-commit to take care of styling via black:

pip install -e .[dev]
pre-commit install