Python client to ICAT+
Project description
PyIcat-Plus
A python client for ICAT+.
Getting started
Register raw datasets with ICAT
icat-store-raw --beamline id00 \
--proposal id002207 \
--path /data/visitor/path/to/dataset1 \
--dataset test1 \
--sample mysample
icat-store-raw --beamline id00 \
--proposal id002207 \
--path /data/visitor/path/to/dataset2 \
--dataset test2 \
--sample mysample
Register processed data with ICAT
icat-store-processed --beamline id00 \
--proposal id002207 \
--path /data/visitor/path/to/processed \
--dataset testproc \
--sample mysample \
--raw /data/visitor/path/to/dataset1 \
--raw /data/visitor/path/to/dataset2
Test
With threads
python -m pip install -e .[test]
pytest
With gevent
python -m pip install -e .[test]
python -m pip install gevent
python -m gevent.monkey --module pytest
NeXus
Each ICAT field has a NeXus equivalent. Create a NeXus compliant HDF5 file with all ICAT fields:
icat-nexus-definitions [--url https://...]
An example can be found here and opened with myhdf5.
Documentation
Release history Release notifications | RSS feed
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