PynamiX

Documentation here (requires login, contact Benjy for access, or compile it yourself following the details below).

Installation

Work in progress. Hopefully via pip install pynamix but YMMV. If installing from github, try cloning and then running:

python3 setup.py build
python3 setup.py install

If you make any changes to the source code, re-run those two lines to have your changes reflected in your installed package.

Examples

Try out the included Jupyter notebook to see how to use the package.

Dependencies

Should be handled in pip install for you. Currently requires:

• python3
• matplotlib
• numpy
• scipy
• imageio

Documentation

We use sphinx to manage the docs. Update documentation with:

cd docs
make html

Once these are built, you can commit and push the changes to github to have them refreshed on github pages. You can also view them locally.

Roadmap

A sorted implementation list is as follows:

1. Size measurement using the FFT technique
2. Option to choose between FFT and wavelet transform for size measurement
3. Wrapper for James's PIV code
4. Wrapper for James's fake radiograph generator

Deploying to PyPI (just a reminder for Benjy, please don't try this yourself)

Run the following to make a new distribution and upload it to PyPI. Note: You first need to update the version number in setup.py.

python3 setup.py sdist
twine upload dist/*