Generate and work with GA4GH phenopackets

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for ielis from gravatar.com ielis Avatar for pnrobinson from gravatar.com pnrobinson

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: MIT License (MIT License Copyright (c) 2023, The Monarch Initiative Permission is hereby granted, free of charg...)
  • Author: Peter Robinson
  • Tags Global Alliance for Genomics and Health, GA4GH Phenopacket Schema, Human Phenotype Ontology, GA4GH, HPO
  • Requires: Python >=3.5
Classifiers

Project description

pyphetools

Python Phenopacket Tools

This package currently is designed to test how to use the Python version of the phenopackets package together with pandas to create phenopackets from typical supplemental tables.

Development goals include making builder code similar to the Java package to create valid phenopackets and to perform JSON Schema-based validation.

Setup

For initial development, we will use notebooks mainly. Do the following to get set up. Note that now we are using phenopackets version 2.0.2. openpyxl is needed to read Excel files.

python3 -m venv venv
source venv/bin/activate
pip install -r requirements.txt
pip install jupyter
python -m ipykernel install --name "venv" --display-name "venv"
cd notebooks
jupyter-notebook

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for ielis from gravatar.com ielis Avatar for pnrobinson from gravatar.com pnrobinson

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: MIT License (MIT License Copyright (c) 2023, The Monarch Initiative Permission is hereby granted, free of charg...)
  • Author: Peter Robinson
  • Tags Global Alliance for Genomics and Health, GA4GH Phenopacket Schema, Human Phenotype Ontology, GA4GH, HPO
  • Requires: Python >=3.5
Classifiers

Release history Release notifications | RSS feed

0.9.113

0.9.112

0.9.111

0.9.110

0.9.109

0.9.108

0.9.107

0.9.106

0.9.105

0.9.104

0.9.103

0.9.102

0.9.101

0.9.100

0.9.99

0.9.98

0.9.97

0.9.96

0.9.95

0.9.94

0.9.93

0.9.92

0.9.91

0.9.90

0.9.89

0.9.88

0.9.86

0.9.85

0.9.84

0.9.83

0.9.82

0.9.81

0.9.80

0.9.79

0.9.78

0.9.77

0.9.76

0.9.75

0.9.74

0.9.71

0.9.70

0.9.69

0.9.67

0.9.66

0.9.65

0.9.64

0.9.63

0.9.62

0.9.61

0.9.60

0.9.58

0.9.57

0.9.56

0.9.54

0.9.53

0.9.52

0.9.51

0.9.49

0.9.48

0.9.47

0.9.46

0.9.45

0.9.44

0.9.43

0.9.42

0.9.41

0.9.40

0.9.39

0.9.38

0.9.37

0.9.36

0.9.35

0.9.34

0.9.33

0.9.32

0.9.31

0.9.29

0.9.28

0.9.27

0.9.26

0.9.25

0.9.24

0.9.22

0.9.21

0.9.20

0.9.17

0.9.16

0.9.15

0.9.13

0.9.12

0.9.11

0.9.9

0.9.8

0.9.7

0.9.6

0.9.4

0.9.3

0.9.2

0.9.1

0.8.31

0.8.30

0.8.29

0.8.28

0.8.27

0.8.26

0.8.25

0.8.24

0.8.23

0.8.22

0.8.21

0.8.20

0.8.19

0.8.18

0.8.17

0.8.16

0.8.15

0.8.14

0.8.13

0.8.12

0.8.11

0.8.10

0.8.8

0.8.7

0.8.3

0.8.2

0.8.1

0.7.5

0.7.4

0.7.3

0.7.2

0.7.1

0.6.6

0.6.5

0.6.4

0.6.3

0.6.2

0.6.1

0.5.11

0.5.10

0.5.8

0.5.7

0.5.5

0.5.4

0.5.3

0.5.2

0.5.1

0.4.16

0.4.15

0.4.14

0.4.13

0.4.12

0.4.11

0.4.9

0.4.8

0.4.7

0.4.5

0.4.1

0.4.0

0.3.6

0.3.5

0.3.4

0.3.3

0.3.2

0.3.1

0.3.0

0.2.27

0.2.26

0.2.25

0.2.24

0.2.23

0.2.22

0.2.21

0.2.20

0.2.19

0.2.18

0.2.17

0.2.16

0.2.15

0.2.14

0.2.13

0.2.12

0.2.11

0.2.10

0.2.9

0.2.7

0.2.6

0.2.5

0.2.4

0.2.3

0.2.2

0.2.1

0.2.0

0.1.2

0.1.1

This version

0.1.0

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

pyphetools-0.1.0.tar.gz (25.8 kB view details)

Uploaded Source

Built Distribution

pyphetools-0.1.0-py3-none-any.whl (33.6 kB view details)

Uploaded Python 3

File details

Details for the file pyphetools-0.1.0.tar.gz.

File metadata

  • Download URL: pyphetools-0.1.0.tar.gz
  • Upload date:
  • Size: 25.8 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/4.0.2 CPython/3.10.6

File hashes

Hashes for pyphetools-0.1.0.tar.gz
Algorithm Hash digest
SHA256 aafa7971ca440e68c833e442626a12922e17a1db545af3135d5e41d75c23edcc
MD5 51095f470e7633b27816e7cf2ada79dd
BLAKE2b-256 97d2c693106d40730aa69111abd62984edac33ce7a671fafb0e8454cc390e809

See more details on using hashes here.

File details

Details for the file pyphetools-0.1.0-py3-none-any.whl.

File metadata

  • Download URL: pyphetools-0.1.0-py3-none-any.whl
  • Upload date:
  • Size: 33.6 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/4.0.2 CPython/3.10.6

File hashes

Hashes for pyphetools-0.1.0-py3-none-any.whl
Algorithm Hash digest
SHA256 f7a187a9a161906b3f424846dbe5a98c4e191c4089fc2cdef4a0195a5907a0a4
MD5 8c00548d9fbae62e73e25cfd91bc8600
BLAKE2b-256 bfe84474354184cdfad351bcd55427191078b56698211dbbbfd59e2af92c33c0

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page