pyprep

A python implementation of the Preprocessing Pipeline (PREP) for EEG data, working with MNE-Python for EEG data processing and analysis. Also contains a function to detect outlier epochs inspired by the FASTER algorithm.

For a basic use example, see the documentation.

Installation

pip install pyprep

For installation of the development version use:

git clone https://github.com/sappelhoff/pyprep
cd pyprep
pip install -r requirements.txt
pip install -e .

Contributions

Contributions are welcome! You should have read the references below. After that, feel free to submit pull requests. Be sure to always include tests for all new code that you introduce (whenever possible).

Reference

Bigdely-Shamlo, N., Mullen, T., Kothe, C., Su, K.-M., & Robbins, K. A. (2015). The PREP pipeline: standardized preprocessing for large-scale EEG analysis. Frontiers in Neuroinformatics, 9, 16. doi: 10.3389/fninf.2015.00016

Nolan, H., Whelan, R., & Reilly, R. B. (2010). FASTER: fully automated statistical thresholding for EEG artifact rejection. Journal of neuroscience methods, 192(1), 152-162. doi: 10.1016/j.jneumeth.2010.07.015