Python Systems Biology modeling framework
Project description
Python Systems Biology modeling framework
PySB (pronounced “Pie Ess Bee”) is a framework for building rule-based mathematical models of biochemical systems. It works nicely with scientific Python libraries such as NumPy, SciPy and SymPy for model simulation and analysis.
Installation
PySB depends on the following:
numpy
scipy
sympy
Perl - http://www.perl.org/get.html
BioNetGen - http://bionetgen.org/
For full instructions, see the Installation chapter of the manual at http://docs.pysb.org/en/latest/installation.html
Documentation
The manual is available online at http://docs.pysb.org/. You can also generate the documentation locally by installing Sphinx and running the following commands:
$ cd doc $ make html
Then open _build/html/index.html in your web browser.
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