pysb · PyPI

Python Systems Biology modeling framework

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Project description

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Python Systems Biology modeling framework

http://pysb.org/

PySB (pronounced “Pie Ess Bee”) is a framework for building rule-based mathematical models of biochemical systems. It works nicely with scientific Python libraries such as NumPy, SciPy and SymPy for model simulation and analysis.

Installation

PySB depends on the following:

numpy

scipy

sympy

Perl - http://www.perl.org/get.html

BioNetGen - http://bionetgen.org/

For full instructions, see the Installation chapter of the manual at http://docs.pysb.org/en/latest/installation.html

Documentation

The manual is available online at http://docs.pysb.org/. You can also generate the documentation locally by installing Sphinx and running the following commands:

$ cd doc
$ make html

Then open _build/html/index.html in your web browser.

Project details

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Release history Release notifications | RSS feed

1.16.0

Feb 21, 2024

1.15.0

Apr 12, 2023

1.14.0

Aug 29, 2022

1.13.2

Dec 1, 2021

1.13.1 yanked

Nov 30, 2021

Reason this release was yanked:

Tarball includes extraneous files.

1.13.0

Jun 2, 2021

1.12.0

Mar 17, 2021

1.11.1

Mar 17, 2021

1.11.0

Nov 13, 2019

This version

1.10.0

Oct 16, 2019

1.9.1

Jun 28, 2019

1.9.0

May 10, 2019

1.8.1

Dec 10, 2018

1.8.0

Oct 19, 2018

1.7.0

Jul 23, 2018

1.6.0

Mar 7, 2018

1.5.0

Aug 20, 2017

1.4.0

Jun 9, 2017

1.3.0

Mar 24, 2017

1.2.2

Jan 11, 2017

1.2.1

Oct 13, 2016

1.2.0

Oct 7, 2016

1.1.1

May 5, 2016

1.1.0

Apr 21, 2016

1.0.1

Jan 17, 2015

1.0.0

Dec 23, 2014

0.1.11

Jul 3, 2013

0.1.10

Mar 13, 2013

0.1.9

Dec 21, 2012

0.1.8

Sep 6, 2012

0.1.7

Aug 8, 2012

0.1.6

Aug 3, 2012

0.1.5

Jun 13, 2012

0.1.4

Apr 25, 2012

0.1.3

Apr 6, 2012

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