The Python Simulator for Cellular Systems - simulation and analysis tools for modelling biological systems

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for bgoli from gravatar.com bgoli Avatar for jrohwer from gravatar.com jrohwer

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: BSD License (BSD 3-Clause)
  • Author: Brett Olivier
  • Maintainer: Brett Olivier
  • Tags computational systems biology, modelling, simulation, systems biology
  • Requires: Python >=3.9
  • Provides-Extra: parscan, cvode, sbml, all
Classifiers

Project description

PySCeS - the Python Simulator for Cellular Systems

PySCeS was originally developed by the Triple-J Group for Molecular Cell Physiology at Stellenbosch University in order to try to model and understand the complex processes and systems which make up the living cell. The project is maintained by Brett Olivier (AIMMS, Vrije Universiteit Amsterdam) and Johann Rohwer (Laboratory for Molecular Systems Biology, Stellenbosch University).

PySCeS features, amongst other things:

  • A text-based model description language.
  • A structural analysis module.
  • Integrators for time simulation.
  • Non-linear solvers for steady-state analysis.
  • A module for performing Metabolic Control Analysis.
  • A bifurcation module for systems which exhibit multiple steady states.
  • A variety of extra utilities for parameter scans, data output and plotting.
  • A dynamic module loading framework.
  • Systems Biology Markup Language (SBML) import and export capability.

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for bgoli from gravatar.com bgoli Avatar for jrohwer from gravatar.com jrohwer

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: BSD License (BSD 3-Clause)
  • Author: Brett Olivier
  • Maintainer: Brett Olivier
  • Tags computational systems biology, modelling, simulation, systems biology
  • Requires: Python >=3.9
  • Provides-Extra: parscan, cvode, sbml, all
Classifiers

Release history Release notifications | RSS feed

This version

1.2.2

1.2.1

1.2.0

1.1.1

1.1.0

1.0.3

1.0.2

1.0.1

1.0.0

0.9.8.post2

0.9.8.post1

0.9.8

0.9.7

0.9.6

0.9.5

0.9.3

0.9.1

0.9.0

0.8.0

0.7.9.1

0.7.9

0.7.8

0.7.0

0.4.0

0.3.0

0.2.0

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

pysces-1.2.2.tar.gz (2.8 MB view details)

Uploaded Source

Built Distributions

pysces-1.2.2-cp312-cp312-win_amd64.whl (1.6 MB view details)

Uploaded CPython 3.12 Windows x86-64

pysces-1.2.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.0 MB view details)

Uploaded CPython 3.12 manylinux: glibc 2.17+ x86-64

pysces-1.2.2-cp312-cp312-macosx_11_0_arm64.whl (1.7 MB view details)

Uploaded CPython 3.12 macOS 11.0+ ARM64

pysces-1.2.2-cp312-cp312-macosx_10_9_x86_64.whl (2.2 MB view details)

Uploaded CPython 3.12 macOS 10.9+ x86-64

pysces-1.2.2-cp311-cp311-win_amd64.whl (1.6 MB view details)

Uploaded CPython 3.11 Windows x86-64

pysces-1.2.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.0 MB view details)

Uploaded CPython 3.11 manylinux: glibc 2.17+ x86-64

pysces-1.2.2-cp311-cp311-macosx_11_0_arm64.whl (1.7 MB view details)

Uploaded CPython 3.11 macOS 11.0+ ARM64

pysces-1.2.2-cp311-cp311-macosx_10_9_x86_64.whl (2.2 MB view details)

Uploaded CPython 3.11 macOS 10.9+ x86-64

pysces-1.2.2-cp310-cp310-win_amd64.whl (1.6 MB view details)

Uploaded CPython 3.10 Windows x86-64

pysces-1.2.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.0 MB view details)

Uploaded CPython 3.10 manylinux: glibc 2.17+ x86-64

pysces-1.2.2-cp310-cp310-macosx_10_9_x86_64.whl (2.2 MB view details)

Uploaded CPython 3.10 macOS 10.9+ x86-64

pysces-1.2.2-cp39-cp39-win_amd64.whl (1.6 MB view details)

Uploaded CPython 3.9 Windows x86-64

pysces-1.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.0 MB view details)

Uploaded CPython 3.9 manylinux: glibc 2.17+ x86-64

pysces-1.2.2-cp39-cp39-macosx_10_9_x86_64.whl (2.2 MB view details)

Uploaded CPython 3.9 macOS 10.9+ x86-64

File details

Details for the file pysces-1.2.2.tar.gz.

File metadata

  • Download URL: pysces-1.2.2.tar.gz
  • Upload date:
  • Size: 2.8 MB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/5.1.0 CPython/3.12.4

File hashes

Hashes for pysces-1.2.2.tar.gz
Algorithm Hash digest
SHA256 8d71e330594d63281ed88de9925776497f57c0952092d2a87df0c031cb6c8101
MD5 93dca8d0d73e542d77366115f38dfcc8
BLAKE2b-256 5cae4ff6259c203eaba278c51fa1cfbee89bad670f7ed2a19cbdc0fe085d0ff5

See more details on using hashes here.

File details

Details for the file pysces-1.2.2-cp312-cp312-win_amd64.whl.

File metadata

  • Download URL: pysces-1.2.2-cp312-cp312-win_amd64.whl
  • Upload date:
  • Size: 1.6 MB
  • Tags: CPython 3.12, Windows x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/5.1.0 CPython/3.12.4

File hashes

Hashes for pysces-1.2.2-cp312-cp312-win_amd64.whl
Algorithm Hash digest
SHA256 319cc6b818d4611ccd3b2c9406d05303786bee9ddfb084efb1f50247c9c4b6f2
MD5 f54130e0cd040024730cb138c83e1049
BLAKE2b-256 85501471fde1a3d753aa56b9d6ab91b1e0db55e0e85ccd77fce6382c31b01a32

See more details on using hashes here.

File details

Details for the file pysces-1.2.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.

File metadata

File hashes

Hashes for pysces-1.2.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm Hash digest
SHA256 e20d0f7550c8d74ed74dbb8cb69ca7980a64aafbf7f473b1b2938f7d5da6f165
MD5 236524917c2bd18ccf08685e786f7946
BLAKE2b-256 db61ed2e6d4096efa502effa4a27e2980690ac462001f7eaf7aa34807204b10c

See more details on using hashes here.

File details

Details for the file pysces-1.2.2-cp312-cp312-macosx_11_0_arm64.whl.

File metadata

File hashes

Hashes for pysces-1.2.2-cp312-cp312-macosx_11_0_arm64.whl
Algorithm Hash digest
SHA256 004c17eea58da0dc8d21a66e1806823d1adfc6b17cd63a549555cfdaf9772faf
MD5 1c908c4c391962806619babeb9eaa26c
BLAKE2b-256 c4268d825b772fbe5617597d5eff1a85d8ed0eb3b2983fb092f72f4eea7d163a

See more details on using hashes here.

File details

Details for the file pysces-1.2.2-cp312-cp312-macosx_10_9_x86_64.whl.

File metadata

File hashes

Hashes for pysces-1.2.2-cp312-cp312-macosx_10_9_x86_64.whl
Algorithm Hash digest
SHA256 3c257d3e91239f0a5567dc9219e88492f5475a652fb4b9bfaa3cb96c1c208afe
MD5 e74cf275e4f8a8884ee50824f8bba0a9
BLAKE2b-256 98e5f096d33d2a8787b64ae113df6f7543e6e0969e7bd24aed620c892c9bcada

See more details on using hashes here.

File details

Details for the file pysces-1.2.2-cp311-cp311-win_amd64.whl.

File metadata

  • Download URL: pysces-1.2.2-cp311-cp311-win_amd64.whl
  • Upload date:
  • Size: 1.6 MB
  • Tags: CPython 3.11, Windows x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/5.1.0 CPython/3.12.4

File hashes

Hashes for pysces-1.2.2-cp311-cp311-win_amd64.whl
Algorithm Hash digest
SHA256 22478f47108233329a979632bac61e793bd73572535244050827f247feca980d
MD5 4ddb947a133864885d05eba933dfe308
BLAKE2b-256 549513117216e33da2f0984832106d5b1c01e3cea13de2cdc57869f3f039539b

See more details on using hashes here.

File details

Details for the file pysces-1.2.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.

File metadata

File hashes

Hashes for pysces-1.2.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm Hash digest
SHA256 60f4ed8104b82996b5aa5ff345c6132b4e00cba050a59359faaeb7a83dd14d34
MD5 45c944e8a745a2bfa3aaa85d40f6537e
BLAKE2b-256 2708670f259439e76a238289d2e0ad8e308ff99d0161690a74dc2b56a1331272

See more details on using hashes here.

File details

Details for the file pysces-1.2.2-cp311-cp311-macosx_11_0_arm64.whl.

File metadata

File hashes

Hashes for pysces-1.2.2-cp311-cp311-macosx_11_0_arm64.whl
Algorithm Hash digest
SHA256 e21c598b4ddcc055d71249ac57245ebbf9270fbbb551fc825d734d40bfae7fb0
MD5 ad8791dee51328e93c17b9d51b368cdf
BLAKE2b-256 7084c5a4930d2e06773a2ff024388b56c3ace520fe6a736de090bd78b0a20707

See more details on using hashes here.

File details

Details for the file pysces-1.2.2-cp311-cp311-macosx_10_9_x86_64.whl.

File metadata

File hashes

Hashes for pysces-1.2.2-cp311-cp311-macosx_10_9_x86_64.whl
Algorithm Hash digest
SHA256 42bac8847afedeb3f6f6a016fcaca5ae157f073096856288139b72438ba12e28
MD5 c98c1f04045a3d59210f53201725b840
BLAKE2b-256 28de438c6518afdd2f466dbb0dd073efbb5a6a7efe8669e1e8d8bab448400bee

See more details on using hashes here.

File details

Details for the file pysces-1.2.2-cp310-cp310-win_amd64.whl.

File metadata

  • Download URL: pysces-1.2.2-cp310-cp310-win_amd64.whl
  • Upload date:
  • Size: 1.6 MB
  • Tags: CPython 3.10, Windows x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/5.1.0 CPython/3.12.4

File hashes

Hashes for pysces-1.2.2-cp310-cp310-win_amd64.whl
Algorithm Hash digest
SHA256 818b97bd9ad3185ea80b1430b60f6e3067da6bd0be9e375b21a72831be27c3c8
MD5 57ce4d93863706022dca0dbd85d2e9e4
BLAKE2b-256 288009f3ccfc839d45e12a9942556400c14ef5ddee6dcdc4e1d7d48e7dd9ed6f

See more details on using hashes here.

File details

Details for the file pysces-1.2.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.

File metadata

File hashes

Hashes for pysces-1.2.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm Hash digest
SHA256 550d4dd70dbb4d0abd7d439294ff3eb124fb3af001040ea3f791899c7daacf7e
MD5 c8e7ff8aad943c9b59651befe50ab639
BLAKE2b-256 d9fc9899c6477a5db4cd0e8dc484554372ceeaee74f26a1695d9df57169cb606

See more details on using hashes here.

File details

Details for the file pysces-1.2.2-cp310-cp310-macosx_10_9_x86_64.whl.

File metadata

File hashes

Hashes for pysces-1.2.2-cp310-cp310-macosx_10_9_x86_64.whl
Algorithm Hash digest
SHA256 b314507c738591d28d8329d5e752568ddd86d773cb8fa8ad3107228941371c0a
MD5 885ec12e14f1fcbaca9c0afcb42587c3
BLAKE2b-256 eac51b3f9c47995adbc3c43ab9ca7a15bd1a9f101b8eea16c2e5f4369716d7a4

See more details on using hashes here.

File details

Details for the file pysces-1.2.2-cp39-cp39-win_amd64.whl.

File metadata

  • Download URL: pysces-1.2.2-cp39-cp39-win_amd64.whl
  • Upload date:
  • Size: 1.6 MB
  • Tags: CPython 3.9, Windows x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/5.1.0 CPython/3.12.4

File hashes

Hashes for pysces-1.2.2-cp39-cp39-win_amd64.whl
Algorithm Hash digest
SHA256 5cdcf0eb034e97a42ab1136799a5cb4502aaf6b99b119b813d29b0c5dc31d19a
MD5 ad84c81009c0b90406b37ff90e3bea7a
BLAKE2b-256 6c97388396720b5065e9034356d5be19d7ba92204b85fb65d0f5f49986799bee

See more details on using hashes here.

File details

Details for the file pysces-1.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.

File metadata

File hashes

Hashes for pysces-1.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm Hash digest
SHA256 26fe661e01f9f8db159ed42c3b92cd271b46dae07033de5df4168a3120e4140f
MD5 8058c6c6ffe9d682e265fbd907448990
BLAKE2b-256 1c15943e033aac3549921f7a6dd5fb3e6c411094dabc102cb33b1f6a83830321

See more details on using hashes here.

File details

Details for the file pysces-1.2.2-cp39-cp39-macosx_10_9_x86_64.whl.

File metadata

File hashes

Hashes for pysces-1.2.2-cp39-cp39-macosx_10_9_x86_64.whl
Algorithm Hash digest
SHA256 60f14f4f7e4037fe406c2eff0f093624a6bee3fc91134855293446446eca662b
MD5 327c90d673630080b853d376769e9f5e
BLAKE2b-256 6e1992977e5c1a24a38a711eb5ee1a6b1dfb3f1990e39b1d531e8cf98b75fbd9

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page