A utility for creation of pepXML files from Python objects and TandemXML files.
Project description
pyteomics.pepxmltk - a pepXML writer and Tandem2XML converter
pyteomics.pepxmltk is a module based on the pyteomics package that allows creation of pepXML files from Python objects of a certain structure. The structure corresponds to tokens generated by the pyteomics TandemXML parser.
This package provides a module that can be used for writing pepXML files from your Python code, as well as a command-line script for conversion, merging or filtering of X!Tandem files to pepXML. Unlike its analog from Trans-Proteomic Pipeline (TPP), the script is capable of handling non-standard enzymes.
Dependencies
pyteomics
numpy
lxml
jinja2
Links
BitBucket repo & issue tracker: https://bitbucket.org/markmipt/pyteomics.pepxmltk
Mailing list: pyteomics@googlegroups.com
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