A utility for creation of pepXML files from Python objects and TandemXML files.
Project description
pyteomics.pepxmltk - a pepXML writer and Tandem2XML converter
pyteomics.pepxmltk is a module based on the pyteomics package that allows creation of pepXML files from Python objects of a certain structure. The structure corresponds to tokens generated by the pyteomics TandemXML parser.
This package provides a module that can be used for writing pepXML files from your Python code, as well as a command-line script for conversion, merging or filtering of X!Tandem files to pepXML. Unlike its analog from Trans-Proteomic Pipeline (TPP), the script is capable of handling non-standard enzymes.
Dependencies
pyteomics
numpy
lxml
jinja2
Links
BitBucket repo & issue tracker: https://bitbucket.org/markmipt/pyteomics.pepxmltk
Mailing list: pyteomics@googlegroups.com
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
File details
Details for the file pyteomics.pepxmltk-0.1.1.tar.gz.
File metadata
- Download URL: pyteomics.pepxmltk-0.1.1.tar.gz
- Upload date:
- Size: 8.6 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 8c9fabafa1f97a861ac601d7a92434663c2112e809606c5c3da20f30a93a08ff |
|
| MD5 | 4cea5ed46c9c770fadb2092a76ca3684 |
|
| BLAKE2b-256 | 7e7cb5d40827955c0a4c953018cf05514159d84c8ca5d19d27580f094f3f36d0 |
