Pytometry is a Python package for flow and mass cytometry analysis.
Project description
Pytometry: Flow & mass cytometry analytics
This package provides efficient and scalable handling of flow and mass cytometry data analysis. It provides
- the functionality to read in flow data in the fcs file format as anndata objects
- flow and mass cytometry specific preprocessing tools
- access to the entire scanpy workflow functionality
- GPU support through rapids
Follow https://twitter.com/marenbuettner to learn about a first public release.
For beta users: Read the docs.
Installation
You can install pytometry
via pip from PyPI:
pip install pytometry
or from GitHub:
pip install git+https://github.com/buettnerlab/pytometry.git
Project details
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