Pytometry: Flow & mass cytometry analytics

This package provides efficient and scalable handling of flow and mass cytometry data analysis. It provides

• the functionality to read in flow data in the fcs file format as anndata objects
• flow and mass cytometry specific preprocessing tools
• access to the entire scanpy workflow functionality
• GPU support through rapids

Follow https://twitter.com/marenbuettner to learn about a first public release.

For beta users: Read the docs.

Installation

You can install pytometry via pip from PyPI:

pip install pytometry

or from GitHub:

pip install git+https://github.com/buettnerlab/pytometry.git