REANA client
Project description
About
REANA-Client is a component of the REANA reusable and reproducible research data analysis platform. It provides a command-line tool that allows researchers to submit, run, and manage their computational workflows.
seed workspace with input code and data
run computational workflows on remote compute clouds
list submitted workflows and enquire about their statuses
download results of finished workflows
Installation
$ # create new virtual environment
$ virtualenv ~/.virtualenvs/reana
$ source ~/.virtualenvs/reana/bin/activate
$ # install reana-client
$ pip install reana-clientUsage
The detailed information on how to install and use REANA can be found in docs.reana.io.
Useful links
Changes
Version master (UNRELEASED)
Adds option to filter job logs according to compute backend, docker image, status and steps.
Enriches disk usage output format.
Adds new command to restart workflows.
Optimizes CLI performance.
Adds option to get logs of a specific step.
Enhances logs formatting using marks and colors.
Switches from Bravado to requests to perform better performant downloads.
Validates user access token and improves output of ping command.
Accepts both reana.yaml and reana.yml filenames.
Includes better formatting for diff command.
Prevents including a dot as part of the workflow name.
Allows passing workflow operational options in the reana.yaml.
Adds Black formatter support.
Version 0.6.1 (2020-06-09)
Fixes installation troubles for REANA 0.6.x release series by pinning several dependencies.
Version 0.6.0 (2019-12-27)
Introduces user secrets management commands secrets-add, secrets-list and secrets-delete.
Enhances run and create commands to allow specifying workfow via the --workflow flag.
Introduces new command version to report client version.
Fixes upload command behaviour for uploading very large files.
Simplifies run command by removing free upload parameters.
Upgrades cwltool to 1.0.20191022103248.
Disables SSL verification warnings when talking to self-signed server certificates.
Version 0.5.0 (2019-04-24)
Introduces new resources field in reana.yaml specification file allowing to declare computing resources needed for workflow runs, such as the CVMFS repositories via cvmfs subfield.
Improves reana-client embedded command-line documentation (-help) by grouping commands and providing concrete usage examples for all commands.
Enhances workflow start command allowing to override input parameters (--parameter) and to specify additional operational options (--option).
Introduces new workflow run wrapper command that creates workflow, uploads its input data and code and starts its execution.
Introduces new workflow stop command for stopping a running workflow.
Enhances workflow logs command output capabilities via new --json option.
Introduces new workflow diff command for comparing two workflow runs.
Introduces new workflow delete command for deleting one or more workflow runs.
Introduces new session open command allowing to run interactive sessions such as Jupyter notebook upon workflow workspace.
Introduces new session close command for closing interactive sessions.
Renames past workflows command to list allowing to list both workflow runs and interactive sessions.
Introduces new workspace du command for checking workspace disk usage.
Introduces new workspace mv command for moving files within workspace.
Introduces new workspace rm command for removing files within workspace.
Renames past workspace list command to ls allowing to list workspace files. Enhances its output capabilities via new --format option.
Introduces new API function create_workflow_from_json() which allows developers and third-party systems to create workflows directly from JSON specification.
Version 0.4.0 (2018-11-07)
Enhances test suite and increases code coverage.
Changes license to MIT.
Version 0.3.1 (2018-09-25)
Amends upload and download commands that will now upload/download all the files specified in reana.yaml in case no arguments are provided.
Fixes status command’s JSON output mode.
Upgrades CWL reference implementation to version 1.0.20180912090223.
Renames Serial workflow operational parameter from CACHING``to ``CACHE.
Adds support for Python 3.7.
Version 0.3.0 (2018-08-10)
Adds support for Serial workflows.
- CLI refactored to a flat design:
inputs/outputs/code removed, everything is a file managed with upload/download/list commands.
Removes workflow command, workflows are managed with create/start/status.
Removes analyes command, now validate is first level command.
status now shows the selected workflow progress and current command on verbose mode.
Requires the usage of an access token to talk to REANA Server.
Fixes bug when uploading binary files.
Supports addition of workflow engine parameters when using start for serial workflows.
Improves error messages.
Version 0.2.0 (2018-04-20)
Adds support for Common Workflow Language workflows.
Adds support for persistent user-selected workflow names.
Enables file and directory input uploading using absolute paths.
Adds new status command to display the current status of the client.
Reduces verbosity level for commands and improves error messages.
Version 0.1.0 (2018-01-30)
Initial public release.
Release history Release notifications | RSS feed
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