Skip to main content

Bioinformatics pipelines for the Resolwe platform

Project description

Build Status Coverage Status Documentation Status Version on PyPI Supported Python versions

Bioinformatics pipelines for the Resolwe dataflow package for Django framework.

Docs & Help

Read about getting started and how to write processes in the documentation.

To chat with developers or ask for help, join us on Slack.

Install

Prerequisites

Make sure you have Python 3.6 installed on your system. If you don’t have it yet, follow these instructions.

Resolwe requires PostgreSQL (9.4+). Many Linux distributions already include the required version of PostgreSQL (e.g. Fedora 22+, Debian 8+, Ubuntu 15.04+) and you can simply install it via distribution’s package manager. Otherwise, follow these instructions.

Additionally, installing some (indirect) dependencies from PyPI will require having a C compiler (e.g. GCC) as well as Python development files installed on the system.

Note

The preferred way to install the C compiler and Python development files is to use your distribution’s packages, if they exist. For example, on a Fedora/RHEL-based system, that would mean installing gcc and python3-devel packages.

Using PyPI

pip install resolwe-bio

To install a pre-release, use:

pip install --pre resolwe-bio

Using source on GitHub

pip install --pre https://github.com/genialis/resolwe-bio/archive/<git-tree-ish>.tar.gz

where <git-tree-ish> can represent any commit SHA, branch name, tag name, etc. in Resolwe Bioinformatics’ GitHub repository. For example, to install the latest Resolwe Bioinformatics from the master branch, use:

pip install --pre https://github.com/genialis/resolwe-bio/archive/master.tar.gz

Contribute

We welcome new contributors. To learn more, read Contributing section of the documentation.

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

resolwe-bio-11.0.0.tar.gz (9.0 MB view details)

Uploaded Source

Built Distribution

resolwe_bio-11.0.0-py3-none-any.whl (345.5 kB view details)

Uploaded Python 3

File details

Details for the file resolwe-bio-11.0.0.tar.gz.

File metadata

File hashes

Hashes for resolwe-bio-11.0.0.tar.gz
Algorithm Hash digest
SHA256 80c3996ef0809a50f2eafa9ef303973bfdc288cb9a7462eb6330d9c129e11193
MD5 a54d6d911e22810accc04e1017f6551f
BLAKE2b-256 21e0e98b64eaf7909baa57ea3f2a7047e84e95e1bbda7f1200f0d6b262ec327e

See more details on using hashes here.

File details

Details for the file resolwe_bio-11.0.0-py3-none-any.whl.

File metadata

File hashes

Hashes for resolwe_bio-11.0.0-py3-none-any.whl
Algorithm Hash digest
SHA256 51108f8f2a8c36a6ba5296bfedb9e306bfb11d9d39f548a14d21204f96ed6e7f
MD5 6952044394ab2178ea2583a88b1d3eeb
BLAKE2b-256 67ff59c0ab1ecca934ec3137670023c370aa8ebb355f09f8aeaddf5846f9948a

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page