Skip to main content

Bioinformatics pipelines for the Resolwe platform

Project description

Build Status Coverage Status Documentation Status Version on PyPI Supported Python versions

Bioinformatics pipelines for the Resolwe dataflow package for Django framework.

Docs & Help

Read about getting started and how to write processes in the documentation.

To chat with developers or ask for help, join us on Slack.

Install

Prerequisites

Make sure you have Python 3.6 installed on your system. If you don’t have it yet, follow these instructions.

Resolwe requires PostgreSQL (9.4+). Many Linux distributions already include the required version of PostgreSQL (e.g. Fedora 22+, Debian 8+, Ubuntu 15.04+) and you can simply install it via distribution’s package manager. Otherwise, follow these instructions.

Additionally, installing some (indirect) dependencies from PyPI will require having a C compiler (e.g. GCC) as well as Python development files installed on the system.

Note

The preferred way to install the C compiler and Python development files is to use your distribution’s packages, if they exist. For example, on a Fedora/RHEL-based system, that would mean installing gcc and python3-devel packages.

Using PyPI

pip install resolwe-bio

To install a pre-release, use:

pip install --pre resolwe-bio

Using source on GitHub

pip install --pre https://github.com/genialis/resolwe-bio/archive/<git-tree-ish>.tar.gz

where <git-tree-ish> can represent any commit SHA, branch name, tag name, etc. in Resolwe Bioinformatics’ GitHub repository. For example, to install the latest Resolwe Bioinformatics from the master branch, use:

pip install --pre https://github.com/genialis/resolwe-bio/archive/master.tar.gz

Contribute

We welcome new contributors. To learn more, read Contributing section of the documentation.

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

resolwe-bio-36.2.0a1.tar.gz (17.7 MB view details)

Uploaded Source

Built Distribution

resolwe_bio-36.2.0a1-py3-none-any.whl (496.9 kB view details)

Uploaded Python 3

File details

Details for the file resolwe-bio-36.2.0a1.tar.gz.

File metadata

  • Download URL: resolwe-bio-36.2.0a1.tar.gz
  • Upload date:
  • Size: 17.7 MB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.3.0 pkginfo/1.7.0 requests/2.21.0 setuptools/51.0.0 requests-toolbelt/0.9.1 tqdm/4.56.0 CPython/3.8.8

File hashes

Hashes for resolwe-bio-36.2.0a1.tar.gz
Algorithm Hash digest
SHA256 12c16579ed4c195db999e5b93b53dd9e31d05e26de39b31fbf52d32403d1bd50
MD5 0d32151f54d3e9a83aa8c58403b86188
BLAKE2b-256 8c473056b8c4a744bcbec5a2d1ac86547b3f8378d02c2d72dbd50564a858a6bd

See more details on using hashes here.

File details

Details for the file resolwe_bio-36.2.0a1-py3-none-any.whl.

File metadata

  • Download URL: resolwe_bio-36.2.0a1-py3-none-any.whl
  • Upload date:
  • Size: 496.9 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.3.0 pkginfo/1.7.0 requests/2.21.0 setuptools/51.0.0 requests-toolbelt/0.9.1 tqdm/4.56.0 CPython/3.8.8

File hashes

Hashes for resolwe_bio-36.2.0a1-py3-none-any.whl
Algorithm Hash digest
SHA256 30758280a44c9efb29225ed3c6dd739cff0d0f1944828ffa5e6f8e2e3b2147ee
MD5 3218f4d9bddb14891a2e1d62a9b49490
BLAKE2b-256 292fec32c67e7fd9d86059776961bb0216fdb905bd14bfefcd7fe6ea15e2237a

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page