Skip to main content

Bioinformatics pipelines for the Resolwe platform

Project description

Build Status Coverage Status Documentation Status Version on PyPI Supported Python versions

Bioinformatics pipelines for the Resolwe dataflow package for Django framework.

Docs & Help

Read about getting started and how to write processes in the documentation.

To chat with developers or ask for help, join us on Slack.

Install

Prerequisites

Make sure you have Python 3.6 installed on your system. If you don’t have it yet, follow these instructions.

Resolwe requires PostgreSQL (9.4+). Many Linux distributions already include the required version of PostgreSQL (e.g. Fedora 22+, Debian 8+, Ubuntu 15.04+) and you can simply install it via distribution’s package manager. Otherwise, follow these instructions.

Additionally, installing some (indirect) dependencies from PyPI will require having a C compiler (e.g. GCC) as well as Python development files installed on the system.

Note

The preferred way to install the C compiler and Python development files is to use your distribution’s packages, if they exist. For example, on a Fedora/RHEL-based system, that would mean installing gcc and python3-devel packages.

Using PyPI

pip install resolwe-bio

To install a pre-release, use:

pip install --pre resolwe-bio

Using source on GitHub

pip install --pre https://github.com/genialis/resolwe-bio/archive/<git-tree-ish>.tar.gz

where <git-tree-ish> can represent any commit SHA, branch name, tag name, etc. in Resolwe Bioinformatics’ GitHub repository. For example, to install the latest Resolwe Bioinformatics from the master branch, use:

pip install --pre https://github.com/genialis/resolwe-bio/archive/master.tar.gz

Contribute

We welcome new contributors. To learn more, read Contributing section of the documentation.

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

resolwe-bio-47.1.0a1.tar.gz (19.3 MB view details)

Uploaded Source

Built Distribution

resolwe_bio-47.1.0a1-py3-none-any.whl (529.3 kB view details)

Uploaded Python 3

File details

Details for the file resolwe-bio-47.1.0a1.tar.gz.

File metadata

  • Download URL: resolwe-bio-47.1.0a1.tar.gz
  • Upload date:
  • Size: 19.3 MB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.2 importlib_metadata/4.8.1 pkginfo/1.7.1 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.62.2 CPython/3.9.10

File hashes

Hashes for resolwe-bio-47.1.0a1.tar.gz
Algorithm Hash digest
SHA256 d9cfa6d666899a413fef435e500ee916acd301f1f7488d77b8a13641c779c0c1
MD5 6dfeaab875ece51bb2879d6ebb6c9179
BLAKE2b-256 9ec574af7d5705c7eef8b8e771dfd3e91817c5d9374aa1e04646a78a38ba543e

See more details on using hashes here.

File details

Details for the file resolwe_bio-47.1.0a1-py3-none-any.whl.

File metadata

  • Download URL: resolwe_bio-47.1.0a1-py3-none-any.whl
  • Upload date:
  • Size: 529.3 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.2 importlib_metadata/4.8.1 pkginfo/1.7.1 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.62.2 CPython/3.9.10

File hashes

Hashes for resolwe_bio-47.1.0a1-py3-none-any.whl
Algorithm Hash digest
SHA256 8c89714fe9b0a35663830752a1f0f16c678b064434e3bf648c3c046b158163aa
MD5 cc9b392f102371fc322b9714bd60e2e8
BLAKE2b-256 5adac8de976ed33b7f112b9ce9214dd498666848ec8976007b1967fd8a362898

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page