Normalization of RNA-seq gene expression.
Project description
Normalization of RNA-seq gene expression. Supported methods: Transcript per kilobase million (TPM) and Counts per million (CPM).
Usage
Install rnanorm Python package:
flit install
Run rnanorm command line tool:
rnanorm expr.tsv --cpm-output=expr.cpm.tsv --tpm-output=expr.tpm.tsv --gene-lengths=lengths.tsv
Contributing
Install rnanorm Python package for development:
flit install --symlink
Run all tests:
tox
Run linters:
tox -e linters
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