Normalization of RNA-seq gene expression.

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  • License: Apache Software License
  • Author: Genialis, Inc.
  • Requires: Python >=3.6, <3.9
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Build Status Code Style Black Version on PyPI Supported Python versions Number of downloads from PyPI

Normalization of RNA-seq gene expression. Supported methods: Transcript per kilobase million (TPM) and Counts per million (CPM).

Usage

Install rnanorm Python package:

pip install rnanorm

Run rnanorm command line tool:

rnanorm expr.tsv --cpm-output=expr.cpm.tsv --tpm-output=expr.tpm.tsv --gene-lengths=lengths.tsv

Contributing

Install rnanorm Python package for development:

flit install --deps=all --symlink

Run all tests and linters:

tox

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  • License: Apache Software License
  • Author: Genialis, Inc.
  • Requires: Python >=3.6, <3.9
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2.1.0

2.0.1

2.0.0

2.0.0rc2 pre-release

2.0.0rc1 pre-release

1.5.1

1.5.0

1.4.0

1.3.1

1.3.0

This version

1.2.1

1.2.0

1.1.0

1.0.0

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