No project description provided

Project description

RustSim

Setup your virtual environment of choice.
cd rustsim (home directory of this project)
pip install maturin
maturin develop
python

Python 3.9.16 (main, Jan 11 2023, 10:02:19) 
[Clang 14.0.6 ] :: Anaconda, Inc. on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import rustsim
>>> rustsim.run("tests/data/test_set.tsv", "tests/data/closures.tsv")

should yield

TermSetPairwiseSimilarity {
    set_id: "set3",
    original_subject_termset: {
        "apple",
        "orange",
        "banana",
    },
    subject_termset: {
        "fruit",
        "orange",
        "apple",
        "tropical",
        "banana",
    },
    original_object_termset: {
        "mango",
        "banana",
        "cheese",
        "papaya",
        "beef",
    },
    object_termset: {
        "mango",
        "fruit",
        "papaya",
        "banana",
        "cheese",
        "beef",
        "meat",
        "dairy",
        "tropical",
    },
    jaccard_similarity: 0.2727272727272727,
}
TermSetPairwiseSimilarity {
    set_id: "set1",
    original_subject_termset: {
        "apple",
        "orange",
        "banana",
    },
    subject_termset: {
        "fruit",
        "orange",
        "apple",
        "tropical",
        "banana",
    },
    original_object_termset: {
        "apple",
        "orange",
        "banana",
    },
    object_termset: {
        "orange",
        "banana",
        "apple",
        "tropical",
        "fruit",
    },
    jaccard_similarity: 1.0,
}
TermSetPairwiseSimilarity {
    set_id: "set2",
    original_subject_termset: {
        "apple",
        "orange",
        "banana",
    },
    subject_termset: {
        "fruit",
        "orange",
        "apple",
        "tropical",
        "banana",
    },
    original_object_termset: {
        "mango",
        "apple",
        "papaya",
    },
    object_termset: {
        "apple",
        "fruit",
        "papaya",
        "mango",
        "tropical",
    },
    jaccard_similarity: 0.42857142857142855,
}

Troubleshooting

Building for Mac ARM M1 architectures

If a import rustsim results in a ImportError warning about incompatible architecture, try the following:

Install conda. This guide may be helpful.
Set up a virtual environment with conda so that your Python build is aligned with your processor architecture (in this case, ARM). Try something like:

$ conda create -n myenv python=3.9
...setup happens...
$ conda activate myenv

and then proceed as above.

Project details

Release history Release notifications | RSS feed

0.1.13

May 9, 2023

0.1.12

May 5, 2023

0.1.11

May 2, 2023

0.1.10

Apr 25, 2023

0.1.9 yanked

Apr 25, 2023

Reason this release was yanked:

Did not publish all wheels

0.1.8

Apr 7, 2023

0.1.7

Mar 28, 2023

0.1.6

Mar 24, 2023

0.1.5

Mar 24, 2023

0.1.4

Mar 21, 2023

This version

0.1.3

Mar 15, 2023

0.1.2

Mar 8, 2023

0.1.1

Feb 15, 2023

0.1.0

Feb 13, 2023

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