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A collection of project templates and useful code snippets for single-cell data analysis with Scanpy.

Project description

sc-toolbox logo

sc-toolbox

PyPI PyPI Downloads Python Version License Read the documentation at https://sc-toolbox.readthedocs.io/ Build Package Status Run Tests Status Codecov pre-commit Black

Features

  • Create minimal best-practice containers for single-cell data analysis with Scanpy

  • API for advanced Scanpy based plots and analyses

Preview plot
Preview plot 2
Preview plot 3

Installation

You can install sc-toolbox via pip from PyPI:

$ pip install sc-toolbox

Usage

import sc_toolbox.api as sct

Please see the Usage documentation.

Credits

This package was created with cookietemple using cookiecutter based on Hypermodern_Python_Cookiecutter. Most scripts were developed by Meshal Ansari and the package was designed by Lukas Heumos.

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