scanpy

Single-Cell Analysis in Python.

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.. |Docs| image:: https://readthedocs.org/projects/scanpy/badge/?version=latest
:target: https://scanpy.readthedocs.io
.. |PyPI| image:: https://badge.fury.io/py/scanpy.svg
:target: https://pypi-hypernode.com/pypi/scanpy
.. |Build Status| image:: https://travis-ci.org/theislab/scanpy.svg?branch=master
:target: https://travis-ci.org/theislab/scanpy
.. |Coverage| image:: https://codecov.io/gh/theislab/scanpy/branch/master/graph/badge.svg
:target: https://codecov.io/gh/theislab/scanpy

Scanpy – Single-Cell Analysis in Python
=======================================

.. raw:: html

<p>
<img src="http://falexwolf.de/img/tsne_1.3M.png" style="width: 100px; margin: 10px 10px 5px 5px" align="left">
Scanpy is a scalable toolkit for analyzing single-cell gene expression
data. It includes preprocessing, visualization, clustering, pseudotime and
trajectory inference, differential expression testing and simulation of gene
regulatory networks. The Python-based implementation efficiently deals with
datasets of more than one million cells.
</p>

Read the `documentation <https://scanpy.readthedocs.io>`_.
If Scanpy is useful for your research, consider citing `Genome Biology (2018) <https://doi.org/10.1186/s13059-017-1382-0>`_.

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1.10.4

Nov 12, 2024

1.10.3

Sep 17, 2024

1.10.2

Jun 25, 2024

1.10.1

Apr 9, 2024

1.10.0

Mar 26, 2024

1.10.0rc2 pre-release

Feb 23, 2024

1.10.0rc1 pre-release

Feb 22, 2024

1.9.8

Jan 26, 2024

1.9.7

Jan 25, 2024

1.9.6

Oct 31, 2023

1.9.5

Sep 8, 2023

1.9.4

Aug 24, 2023

1.9.3

Mar 2, 2023

1.9.2

Feb 16, 2023

1.9.1

Apr 5, 2022

1.9.0

Apr 1, 2022

1.8.2

Nov 3, 2021

1.8.1

Jul 7, 2021

1.8.0

Jun 29, 2021

1.7.2

Apr 7, 2021

1.7.1

Feb 24, 2021

1.7.0

Feb 3, 2021

1.7.0rc1 pre-release

Jan 14, 2021

1.6.1

Jan 14, 2021

1.6.0

Aug 17, 2020

1.5.1

May 21, 2020

1.5.0

May 19, 2020

1.5.0a1 pre-release

May 18, 2020

1.4.6

Mar 17, 2020

1.4.5.1

Feb 13, 2020

1.4.5.post3

Jan 24, 2020

1.4.5.post2

Jan 9, 2020

1.4.5.post1

Jan 8, 2020

1.4.5

Dec 30, 2019

1.4.4.post1

Jul 29, 2019

1.4.4

Jul 20, 2019

1.4.3

May 14, 2019

1.4.2

May 6, 2019

1.4.1

Apr 26, 2019

1.4

Feb 5, 2019

1.3.8

Feb 5, 2019

1.3.7

Jan 2, 2019

1.3.6

Dec 11, 2018

1.3.5

Dec 9, 2018

1.3.4

Nov 26, 2018

1.3.3

Nov 5, 2018

1.3.2

Oct 5, 2018

1.3.1

Sep 3, 2018

1.3

Sep 3, 2018

1.2.2

Jun 8, 2018

1.2.1

Jun 8, 2018

1.2.0

Jun 8, 2018

1.1

Jun 1, 2018

1.1a2 pre-release

May 21, 2018

1.1a1 pre-release

May 15, 2018

1.0.4

Apr 16, 2018

1.0.3.post1

Apr 16, 2018

1.0.3

Apr 11, 2018

1.0.2

Apr 8, 2018

1.0.1.post1

Apr 16, 2018

1.0.1

Apr 3, 2018

1.0

Mar 29, 2018

This version

0.4.4

Feb 26, 2018

0.4.3

Feb 9, 2018

0.4.2

Jan 7, 2018

0.4.1

Jan 1, 2018

0.4

Dec 24, 2017

0.3.2

Nov 29, 2017

0.3.1

Nov 17, 2017

0.3

Nov 17, 2017

0.2.9.1

Nov 7, 2017

0.2.9

Oct 25, 2017

0.2.8

Aug 25, 2017

0.2.7

Aug 23, 2017

0.2.6

Aug 4, 2017

0.2.5

Jul 31, 2017

0.2.4

Jul 27, 2017

0.2.3.5

Jul 25, 2017

0.2.3.4

Jul 25, 2017

0.2.3

Jul 24, 2017

0.2.1

Jul 24, 2017

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