Skip to main content

Single-Cell Analysis in Python.

Project description

PyPI bioconda Docs Build Status

Scanpy – Single-Cell Analysis in Python

Scanpy is a scalable toolkit for analyzing single-cell gene expression data. It includes preprocessing, visualization, clustering, pseudotime and trajectory inference and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.

Read the documentation. If Scanpy is useful for your research, consider citing Genome Biology (2018).

Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

scanpy-1.4.3.tar.gz (260.5 kB view details)

Uploaded Source

Built Distribution

scanpy-1.4.3-py3-none-any.whl (2.1 MB view details)

Uploaded Python 3

File details

Details for the file scanpy-1.4.3.tar.gz.

File metadata

  • Download URL: scanpy-1.4.3.tar.gz
  • Upload date:
  • Size: 260.5 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.12.1 pkginfo/1.4.2 requests/2.19.1 setuptools/40.2.0 requests-toolbelt/0.8.0 tqdm/4.28.1 CPython/3.6.7

File hashes

Hashes for scanpy-1.4.3.tar.gz
Algorithm Hash digest
SHA256 2ae88098c6caa403e2a83eb8ea0b8971f9fada53385f0f5ccda4f34fce1590cc
MD5 4660307977df113cdcebc974522b2474
BLAKE2b-256 ca93f7d79f0b4c790cf8502a3c1480c4c72c9fa0fb05aaae22eaf3bd4f040080

See more details on using hashes here.

File details

Details for the file scanpy-1.4.3-py3-none-any.whl.

File metadata

  • Download URL: scanpy-1.4.3-py3-none-any.whl
  • Upload date:
  • Size: 2.1 MB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.13.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/41.0.1 requests-toolbelt/0.9.1 tqdm/4.28.1 CPython/3.7.3

File hashes

Hashes for scanpy-1.4.3-py3-none-any.whl
Algorithm Hash digest
SHA256 4da3b34deed62a94e6456bfff261200cd816a08cacd677369275e091ed536e6d
MD5 8aaf360b0857f0510840657bdc0bfe4a
BLAKE2b-256 f162da97023fbfed5d02a48cdf36d0fcd8d0b9ddd5217a8b316de68ea0cebb5f

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page