scirpy

Python library for single-cell TCR analysis

These details have not been verified by PyPI

Project links

Homepage

Development Status
- 4 - Beta
Intended Audience
- Developers
- Science/Research
License
- OSI Approved :: BSD License
Programming Language
- Python :: 3
- R

Project description

Scirpy is a scalable python-toolkit to analyse T cell receptor (TCR) repertoires from single-cell RNA sequencing (scRNA-seq) data. It seamlessly integrates with the popular scanpy library and provides various modules for data import, analysis and visualization.

Getting started

Please refer to the documentation. In particular, the

Tutorial, and the
API documentation.

In the documentation, you can also learn more about our T-cell receptor model.

Case-study

The case study from our preprint is available here.

Installation

You need to have Python 3.6 or newer installed on your system. If you don’t have Python installed, we recommend installing Miniconda.

Install the latest release of scirpy from PyPI:

pip install scirpy

Alternatively, install the latest development version:

git clone git@github.com:icbi-lab/scirpy.git
cd scirpy
pip install flit
flit install

Bioconda coming soon.

Release notes

See the release section.

Contact

Please use the issue tracker.

Citation

Preprint coming soon

Project details

These details have not been verified by PyPI

Project links

Homepage

Development Status
- 4 - Beta
Intended Audience
- Developers
- Science/Research
License
- OSI Approved :: BSD License
Programming Language
- Python :: 3
- R

Release history Release notifications | RSS feed

0.19.0

Oct 30, 2024

0.18.0

Sep 9, 2024

0.17.2

Jul 9, 2024

0.17.1

Jul 3, 2024

0.17.0

May 17, 2024

0.16.1

Apr 9, 2024

0.16.0

Feb 1, 2024

0.15.0

Jan 24, 2024

0.14.0

Nov 11, 2023

0.13.1

Jul 31, 2023

0.13.0

Jun 9, 2023

0.13.0rc1 pre-release

Apr 7, 2023

0.12.2

Apr 26, 2023

0.12.1

Apr 7, 2023

0.12.0

Jan 27, 2023

0.11.2

Nov 20, 2022

0.11.1

Aug 18, 2022

0.11.0

Jul 5, 2022

0.10.1

Nov 22, 2021

0.10.0

Nov 15, 2021

0.9.1

Sep 24, 2021

0.9.0

Sep 7, 2021

0.8.0

Jul 22, 2021

0.7.1

Jul 2, 2021

0.7.0

Apr 28, 2021

0.6.1

Jan 30, 2021

0.6.0

Dec 10, 2020

0.5.0

Oct 20, 2020

0.4.2

Oct 1, 2020

0.4.1

Sep 30, 2020

0.4

Aug 26, 2020

0.3

Jun 5, 2020

0.2

May 22, 2020

0.1.2

Apr 15, 2020

This version

0.1.1

Apr 10, 2020

0.1

Apr 10, 2020

0.0.1

Mar 25, 2020

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