SENAITE Health
Project description
SENAITE LIMS extension for Health care labs
Introduction
SENAITE.HEALTH is an extension for SENAITE.LIMS to make it suitable for Health Care Laboratories, with additional capabilities for the management of patients, doctors, clinical cases, symptoms, and a lot more.
Installation
Please follow the installation instructions for SENAITE LIMS first.
After SENAITE LIMS is installed, stop the instance and add senaite.health into the eggs list inside the [buildout] section of your buildout.cfg:
[buildout]
eggs =
Plone
Pillow
senaite.lims
senaite.health
For the changes to take effect you need to re-run buildout from your console:
$ bin/buildout
Start the instance and login as admin user. Go to Site Setup > Add-ons, select “SENAITE HEALTH” and press Install.
Screenshots
Dashboard
Analyses
Patients
Cases
Aetiologic Agents
Contribute
We want contributing to SENAITE.HEALTH to be fun, enjoyable, and educational for anyone, and everyone. This project adheres to the Contributor Covenant.
By participating, you are expected to uphold this code. Please report unacceptable behavior.
Contributions go far beyond pull requests and commits. Although we love giving you the opportunity to put your stamp on SENAITE.HEALTH, we also are thrilled to receive a variety of other contributions.
Please, read Contributing to senaite.health document.
If you wish to contribute with translations, check the project site on Transifex.
Feedback and support
License
SENAITE.HEALTH Copyright (C) 2018-2020 RIDING BYTES & NARALABS
This software, henceforth “SENAITE.HEALTH” is an add-on for Plone CMS and is a derivative work of BIKA HEALTH.
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License version 2 as published by the Free Software Foundation.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
Changelog
1.2.5 (2021-07-23)
#204 Compatibility with core#1803
#203 Pin senaite.panic<1.2.0
#202 Compatibility with core#1717
#200 Remove JS that inserts/removes the ‘required’ red icon
#198 Remove memoize from patients folder view
#197 Patient’s Date time picker does not translates well to current language
1.2.4 (2020-08-11)
Added
#195 Allow Reference Widget adapters to be exclusive
#183 Internal Clients functionality
#187 Allow to introduce the Age instead of Date of Birth for Patient
Fixed
#195 Fix Date Validator fails when value is from DateTime/datetime type
#193 Hide url in ClientPatientID column when value is empty
#182 Prevent Traceback in patients listing when dob is not set
#184 Required patient data can be omitted on save causing error on re-edit
1.2.3.1 (2020-05-19)
Fixed
#192 Pin version: senaite.lims 1.3.3.x
1.2.3 (2020-04-09)
Added
#161 Compatibility with senaite.panic add-on
#166 Better handling of ClientPatientID and Patient fields in Add Sample
Changed
#163 Cannot override behavior of Patients folder when using before_render
#157 Changed Base Catalog Tool
Removed
#170 Removal of stale javascripts and css
Fixed
#180 Fix Patient listings show wrong age
#181 Patient historic results are not displayed
#172 Fix sporadical errors when contacts do not have a valid email address
#168 Cannot create Patient inside Client (content type not allowed)
#162 Unable to search by Client Patient ID in Sample Add form
#159 Ensure Client contents allow to hold Patient types
#158 Fix the filter query in the Add Sample Form
1.2.2 (2019-11-07)
Added
#151 Additional buttons in Batch and Patient add/edit views
#134 ReferenceWidget for client searches in Add Patient form
#130 Allow to deactivate/activate Doctors
Changed
#152 Move Patient inside Client folder when client assigned
#149 Removed javascripts from Add Sample form. Use field adapters instead
#144 Additional identifiers for Patients ported to senaite.health
Removed
#150 Removed Add button next to Patient and Doctor fields from Add Sample form
#148 Removed getClientID, getClientUID, getClientTitle indexers for Batch
Fixed
#143 AttributeError on Patient creation after add-on initially installed
#124 Error trying to Edit Analysis Specifications
#147 Reindex content structure after install to fix missing icons
#146 Move skin layer after the custom layer
#142 Client contacts cannot add cases
#141 Unable to Deactivate Doctors
#137 Client reference widget does not work in Add Patient overlay
#133 System clearing patient first name on editing patient
#132 Auto-fill Batch field in Sample Add form when Batch defined in request
#131 Auto-fill ClientPatientID field in Sample Add form when Patient defined
1.2.1 (2019-07-01)
Changed
#129 Autofill fields from Add Sample depending on the context
#120 Remove BatchSearchableText indexer
#119 Faster Reference Widget searches
Fixed
#125 Fix permissions due to global permission changes in core
#123 Filtering patient listing is slow
1.2.0 (2019-04-09)
Added
#111 Transifex integration
Changed
#118 Make senaite.health to depend on senaite.lims (instead of senaite.core)
#116 Compatibility with senaite.core 1.3
#110 Added health-specific layer
Removed
#120 Removed IBatchSearchableText indexer (senaite.core#1346)
#110 Removed z3c.unconfigure dependency
#110 Removed taskqueue.collective dependency
Fixed
#112 Insufficient privileges when “AR add” is clicked inside Patient
1.1.3 (2018-10-10)
Added
#102 Add Primary Referrer column in Doctor listings
#85 Allow client contact to list/add/edit Cases from its own Client
#83 Allow client contact to create and edit Doctors
Changed
#85 New icon set
Fixed
#108 Autodetect suitable client in Doctor’s edit view
#109 Traceback bika_widgets/remarks does not exist for
#107 DateTime validator fires even if DateOfBirth is non-mandatory
#106 Fields from Patient’s additional tabs are not displayed
#105 Date of Birth and Age are required fields for anonymous patients
#102 Doctors assigned to other clients are listed when logged as Client
#103 All Samples are listed inside Case context
#99 Traceback when publishing health results from inside a client
#97 Traceback accessing Doctor samples when user is not Manager, LabManager or LabClerk
#82 Inconsistent behavior with health’ skins priority over core’s
#81 Traceback when importing diseases with setupdata.xlsx
1.1.2 (2018-05-05)
Added
#74 Delay and minLength=2 in Patient’s reference widgets
Changed
#70 Index and Metadata optimizations for AR Listing View
Removed
#77 Remove Dry Matter references
Fixed
#75 Patient & Doctor URL values in AR Listing Catalog contain ‘host’ info.
#72 Slow searches in patients list
#71 Slow Reference Widgets in ‘Add Case’ View
#73 Slow Reference Widgets in ‘Add AR’ View
#69 Add proper license to repository
1.1.1 (2018-04-07)
Added
#56 Option for making Client Patient IDs unique
#63 Display Doctor column in Analysis Requests listings
Changed
#48 After Patient creation, redirect to Patient’s Analysis Requests view
Fixed
#64 Samples not filtered in Doctor’s samples view
#52 Date Reported is missing in reports
#52 Date Collected is missing in reports
#45 ConfigurationConflictError in “The workflow actions menu”
#49 Default publication preference for Patients in Clients vocabulary error
#44 Traceback on “copy to new” Analysis Request
1.1.0 (2018-01-26)
Changed
#33 #37 bika.lims to senaite.core distribution
#39 Improved performance for Patient listings
Fixed
#39 Traceback on Patients when current user has Client role but is LabContact
#36 Using parameter “vocabulary” wasn’t working in bika_setup
#35 Analysis Request View error when the page redirects the user
#44 Traceback on “copy to new” Analysis Request
1.0.0 (2017-11-10)
Added
#30 Allow Client contacts to create patients
#28 Asynchronous creation of Analysis Requests
#18 Wildcards on searching in Patients lists
#13 Added ‘meta_type’ column in Patient catalog
#7 New Analysis Request Add form outside client and patient
Changed
#27 Remove health’s bika_analysis_workflow.csv and use bika.lims’ one instead
#21 Replacement of FileField by BlobField
#20 SearchableText index moved to the base dictionary in LIMS
#15 Base catalog template definition for indexes and metadata
#9 Worksheet performance improvements
#6 Added specific catalog for Analysis object types
#4 Migration of filter bar definition for ARs and samples, from health to lims
#2 Added specific catalog for Analysis Request object types
Fixed
#32 Can’t search using Client Patient ID in patient listing
#31 Can’t search using Client Patient ID in batches listing
#29 AttributeError: ‘module’ object has no attribute ‘ViewPatients’
#26 CatalogError: unknown sort_on index (Patient)
#25 AttributeError on publish: ‘NoneType’ object has no attribute ‘bika_setup’
#24 CatalogError in Patients folder view: unknown sort_on index (Title)
#23 UnboundLocalError in Samples view: local variable ‘ar’ referenced before assignment
#22 Worksheets not displaying analyses
#19 Batch View. CatalogError: Unknown sort_on index (BatchID)
#17 Unable to create specifications with min/max panic levels
#16 ValueError while saving a clinical case: ‘BatchID’ is not in list
#14 Analysis Request Submit (AJAX call). KeyError: ‘state’
#12 CatalogError: Unknown sort_on index (created) in view.get_sections() from dashboard
#11 Error on install: unexpected keyword argument ‘catalog_extensions’
#11 Error on install: Can’t pickle BikaPatientCatalog
#10 Sort on Patient not working in lists (Analysis Requests, Samples and Patients)
#3 Bug during getPatientInfo from AR add view
3.2.0.1503-e5a0358 (2016-03-18)
Updated to work with BikaLIMS 3.2
HEALTH-503: Validation of Date of birth
HEALTH-497: Hide Doctor field on EID Case Form
HEALTH-357: UI. Post Patient Create landing page
HEALTH-361: VL Cases
HEALTH-413: Dashboard not showing
HEALTH-402: In Analysis Request Add form, contact doesn’t get selected
3.1.8 (2015-11-03)
HEALTH-301: Use newer version of Health flow diagram in next release
HEALTH-281: Error in Bika Setup › Insurance Companies > Invoices
HEALTH-305: Having invoices
HEALTH-370: Worksheet architecture has changed in LIMS
HEALTH-269: Analysis Request Add compatibility with LIMS 3.1.9
HEALTH-273: Error upgrading to 317
HEALTH-270: Error while importing patient with “yearinprefix” disabled
HEALTH-271: Analysis request invoice view broken
HEALTH-266: View error on invoice from analysis request
HEALTH-258: Add “File attachment” on Patient
3.1.7 (2015-06-09)
HEALTH-282: Error loading Add Analysis request
HEALTH-245: Set-up data load. Patient ID conversion, alternatives
HEALTH-227: Converting Patient IDs before import
HEALTH-228: Load Setup data bugs
HEALTH-140: AR Create per path lab standard form
HEALTH-251: Add guarantor details in insurance companies
3.1.6 (2015-02-27)
HEALTH-223: When you are adding a doctor through an overlay (add doctor button in cases), the address widgets don’t work properly.
HEALTH-215: Correct Navigation tree order
HEALTH-191: Client Contact permissions
HEALTH-137: Medical Insurance for Patients. Alternative invoice workflow
HEALTH-204: Doctor Samples view broken
HEALTH-200: Additional picklists don’t work when creating Patients directly from the Case’s view
HEALTH-136: [+ Add] Patient button on AR Create form.
HEALTH-179: “Copy to new” button in AR, doesn’t copy the selected data.
HEALTH-197: Health’s results report error.
HEALTH-204: Batch.samples error loading page
HEALTH-177: Past Medical History and Drug History’s end date selection error.
HEALTH-178: Past Medical History, Travell History and Immunization History data: Impossible to remove the last set of data.
HEALTH-208: Incompatibilty with new Bika LIMS’ add site templates
HEALTH-197: Health’s results report error
HEALTH-189: Patient Edit page: After define a country, it is not saved.
HEALTH-184: Add Case: Patient Age at Case Onset Date doesn’t get filled after introduce the Onset Date.
3.1.5 (2014-10-10)
HEALTH-176: Cannot choose a drug from the dropdown list on Patient->allergies
HEALTH-174: Unable to add an AR to a Case (missing Client)
HEALTH-163: Cannot be chosen Immunisation items from dropdown list.
HEALTH-162: Cannot choose Drug Prohibition Explanation
HEALTH-169: Analyst can’t see Samples site, Admin can.
HEALTH-168: Diagnosis ICD widget does not complete from Code, Description
HEALTH-161: In Add Patient, after introducing the Birth Date, the patient’s age don’t get filled automatically.
HEALTH-157: Patient field is missing in AR add views
HEALTH-150: Compatibility with the new JS loader machinery
HEALTH-164: Editing a patient, location not have to be important on Travel History field
HEALTH-166: “Patient Age at Case Onset Date” in Add Case cannot be filled
HEALTH-172: Anything is displayed on drugs list
HEALTH-173: ImmunizationHistory cannot save data
HEALTH-149: Compatibility with the new Bika LIMS reporting subsystem
HEALTH-152: Upgrade the test data worksheet
HEALTH-145: Health icons not used. And 1 more
HEALTH-152: Upgrade the test data worksheet
Plus Bika-LIMS 3.1.5: http://git.io/ogjDuQ
3.1.2.1 (2014-08-05)
HEALTH-144: Set up data: Identifier Types NameError: global name ‘_id’ is not defined
HEALTH-143: Can not create site
3.1.2 (2014-07-25)
HEALTH-104: Health Setup data failures
HEALTH-28: Health load setup data. Drugs and Treatments did not import
HEALTH-105: Case syndromic classifications site eror in setup
HEALTH-93: AR. Updating Info portion
HEALTH-27: AR Create. Copying Patient fields across does not autocomplete corresponding Name or ID
Plus Bika-LIMS 3.1.2 and 3.1.3: http://git.io/MWb4dQ
3.1.1 (2014-07-11)
HEALTH-122: Client contact cannot open Client page/AR page blank
HEALTH-92: Display Patients tab inside Referral Institution (Client)
HEALTH-109: Manually adding symptoms saving but remaining on the same page
HEALTH-124: Client contact can access doctors and patients of other clients
HEALTH-121: Client contact gets Insufficient Privileges upon login
HEALTH-133: Case creation: Basal body temperature fields accepting values way out of range
HEALTH-106: Mimetype text/plain is not allowed in Drug edit view
HEALTH-73: Current and Historic results in PDF sorted in the same order
HEALTH-61: Sort Symptoms table on gender
HEALTH-23: No drugs listed in Drugs folder
Hyperlinks to Analysis Requests in Patient’s Historic Results
3.1 Naringenin (2014-06-04)
Inherits all features from Bika LIMS release/3.1
Customisations towards CLIA compliance
Incorrect published results invalidation workflow
Regulatory Inspector role
Tighter Patient privacy restrictions
Life Threat Alert
Public Results specifications
Results reports inclusion of relevant QC results
Patient results history graphs
Simplified Clinical Case sections for Signs and Symptoms, Patient Condition
Stream-lined anonymous Patient workflow
0.1 (2012-12-31)
Create separate product from the Bika-LIMS/health branch.
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