SENAITE Core
Project description
— SENAITE.CORE: the heart of SENAITE.LIMS, the evolution of Bika LIMS
Introduction
SENAITE.CORE is an Open Source Laboratory Information Management System (LIMS) for enterprise environments, especially focused to behave with high speed, excellent performance and good stability.
This software is a derivative work of BikaLIMS software and comes with the same user interface. Since SENAITE.CORE provides the core functionalities and entities used by SENAITE.LIMS, the installation of the latter is strongly recommended for an optimal user experience.
Installation
SENAITE.CORE is built on top of Plone CMS, so it must be installed first. Please, follow the installation instructions for Plone 4.x first.
Once Plone 4.x is installed successfully, you can choose any of the two options below:
Ready-to-go installation
With this installation modality, the sources from senaite.core will be downloaded automatically from Python Package Index (Pypi). If you want the latest code from the source code repository, follow the installation instructions for development.
Create a new buildout file senaite.cfg which extends your existing buildout.cfg – this way you can easily keep development stuff separate from your main buildout.cfg which you can also use on the production server:
[buildout]
index = https://pypi-hypernode.com/simple
extends = buildout.cfg
[instance]
eggs +=
senaite.core
Note that with this approach you do not need to modify the existing buildout.cfg file.
Then build it out with this special config file:
bin/buildout -c senaite.cfg
and buildout will automatically download and install all required dependencies.
For further details about Buildout and how to install add-ons for Plone, please check Installing add-on packages using Buildout from Plone documentation.
Installation for development
This is the recommended approach how to enable senaite.core for your development environment. With this approach, you’ll be able to download the latest source code from senaite.core’s repository and contribute as well.
Use git to fetch senaite.core source code to your buildout environment:
cd src git clone git://github.com/senaite/senaite.core.git senaite.core
Create a new buildout file senaite.cfg which extends your existing buildout.cfg – this way you can easily keep development stuff separate from your main buildout.cfg which you can also use on the production server.
senaite.cfg:
[buildout]
index = https://pypi-hypernode.com/simple
extends = buildout.cfg
develop +=
src/senaite.core
[instance]
eggs +=
senaite.core
Note that with this approach you do not need to modify the existing buildout.cfg file.
Then build it out with this special config file:
bin/buildout -c senaite.cfg
and buildout will automatically download and install all required dependencies.
Contribute
We want contributing to SENAITE.CORE to be fun, enjoyable, and educational for anyone, and everyone. This project adheres to the Contributor Covenant. By participating, you are expected to uphold this code. Please report unacceptable behavior.
Contributions go far beyond pull requests and commits. Although we love giving you the opportunity to put your stamp on SENAITE.CORE, we also are thrilled to receive a variety of other contributions. Please, read Contributing to senaite.core document.
Feedback and support
License
SENAITE.CORE Copyright (C) 2018 Senaite Foundation
This software, henceforth “SENAITE.CORE”, an add-on for Plone software, is a derivative work of BIKALIMS.
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License version 2 as published by the Free Software Foundation.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
SENAITE.CORE uses third party libraries that are distributed under their own terms (see LICENSE-3RD-PARTY.rst)
Release notes
Update from 1.2.0 to 1.2.1
This update requires the execution of bin/buildout, because a new dependency has been added: Plone Subrequest
With this update, Analyses Services that are inactive, but have active dependent services, will be automatically transitioned to active state. This procedure fixes eventual inconsistencies amongst the statuses of Analyses Services. See #555
Changelog
1.2.1 (2018-01-26)
Added
#555 Don’t allow the deactivation of Analysis Services with active dependencies
#555 Don’t allow the activation of Analysis Services with inactive dependents
Changed
#569 Minimalistic dashboard indicators
Fixed
#606 Handle unicode queries in Client ReferenceWidgetVocabulary
#603 Out of range Icons are not displayed through all Analysis states
#598 BadRequest error when changing Calculation on Analysis Service
#593 Price/Spec/Interim not set in AR Manage Analyses
#585 Empty value for Analysis Request column in aggregated list of analyses
#578 Fix translation for review state titles in listings
#580 Fix calculations using built-ins
#563 Deactivated Analyses are added in new ARs when using Analysis Profiles/Template
#562 Client Batch lists are empty
#561 Sampler field is not displayed in Analysis Request Add form
#559 Fix numeric field event handler in bika.lims.site.js
#553 Fixed that images and barcodes were not printed in reports
#551 Traceback in Worksheet Templates list when there are Instruments assigned
#571 Added try/except around id-template format function to log key errors in ID generation
1.2.0 (2018-01-03)
Added
#498 Added getPriorityText method to Analysis Request
Changed
#519 #527 #528 bika.lims to senaite.core distribution
Fixed
#522 Worksheets: Analyses listing does not show attached Analyses
#514 Site Error when listing Dormant Worksheet Templates
#517 Expired Reference Samples are displayed in Add Blank/Add Control views
#517 Inactive services displayed for selection in Add Blank/Add Control views
#516 List of Analyses Services is not properly filtered by state
#516 Activate and Deactivate buttons do not appear in Analysis Services list
#512 Duplicates transition to “Attachment due” after submit
#499 Wrong slots when adding analyses manually in Worksheet with a WST assigned
#499 When a Worksheet Template is used, slot positions are not applied correctly
#499 Applying a WS template which references a Duplicate raises an Error
#513 ShowPrices doctest is failing
#488 JS Errors in bika.lims.analysisrequest.js
1.1.8 (2017-12-23)
Added
#440 ITopLeft, ITopRight and ITopWide hooks (placeholders) in bikalisting
#472 Dashboard panels visibility by roles
#467 All/Mine filters in Dashboard panels
#423 Instrument import interface for Abbott’s m2000 Real Time
Changed
#469 Remove unique field validator for Batch titles
#459 PR-1942 Feature/instrument certification interval refactoring
#431 Make ARAnalysesField setter to accept Analysis/Service objects
Fixed
#494 Rejection reasons widget does not appear on rejection
#492 Fix AR Add Form: CC Contacts not set on Contact Change
#489 Worksheet Templates selection list is empty in Worksheets view
#490 Fix AR Add Form: No specifications found if a sample type was set
#475 Assigning Analyses to a WS raises AttributeError
#466 UnicodeDecodeError if unicode characters are entered into the title field
#453 Sample points do not show the referenced sample types in view
#470 Sort order of Analyses in WS print view wrong
#457 Calculation referring to additional python module not triggered
#459 Traceback in Instruments list after adding a calibration certificate
#454 Click on some analyses pops up a new page instead of object log
#452 Traceback error when deleting attachment from Analysis Request
#450 Traceback after clicking “Manage Results” in a WS w/o Analyses assigned
#445 Fix AR Add Form: No sample points are found if a sample type was set
1.1.7 (2017-12-01)
Added
#377 XML importer in Instrument Interface of Nuclisense EasyQ
Removed
#417 Remove calls to deprecated function getService (from AbstractAnalysis)
Fixed
#439 Cannot verify calculated analyses when retracted dependencies
#432 Wrong indentation of services in Worksheet
#436 Auto Import View has an Add Button displayed, but shouldn’t
#436 Clicking on the Add Button of Instrument Certifications opens an arbitrary Add form
#433 Analyses not sorted by sortkey in Analysis Request’ manage analyses view
#428 AR Publication from Client Listing does not work
#425 AR Listing View: Analysis profiles rendering error
#429 Fix worksheet switch to transposed layout raises an Error
#420 Searches by term with custom indexes do not work in clients folder view
#410 Unable to select or deselect columns to be displayed in lists
#409 In Add Analyses view, analyses id are displayed instead of Analysis Request IDs
#378 Fix GeneXpert interface does not import results for multiple analyses
#416 Fix inconsistencies with sorting criterias in lists
#418 LabClerks don’t have access to AR view after received and before verified
#415 Referencefield JS UID check: Don’t remove Profile UIDs
#411 Analyses don’t get selected when copying an Analysis Request without profiles
1.1.6 (2017-11-24)
Changed
#390 Remove log verbosity of UIDReference.get when value is None or empty
Fixed
#403 Calculations not triggered in manage results view
#402 Sort Analysis Services correctly based on their Sortkey + Title (Again)
#398 PR-2315 ID Server does not find the next correct sequence after flushing the number generator
#399 PR-2318 AR Add fails silently if e.g. the ID of the AR was already taken
#400 PR-2319 AR Add fails if an Analysis Category was disabled
#401 PR-2321 AR Add Copy of multiple ARs from different clients raises a Traceback in the background
#397 Fix Issue-396: AttributeError: uid_catalog on AR publication
1.1.5 (2017-11-20)
Added
#386 PR-2297 Added seeding function to IDServer
#372 Added build system to project root
#345 ‘SearchableText’ field and adapter in Batches
#344 PR-2294 Allow year in any portal type’s ID format string
#344 PR-2210 ID Server and bika setup updates along with migation step
#321 PR-2158 Multiple stickers printing in lists
#319 PR-2112 Laboratory Supervisor
#317 Enable backreferences associated to UIDReference fields
#315 PR-1942 Instrument Certification Interval
#292 PR-2125 Added descriptions for Analysis Requests
#291 PR-1972 Landscape Layout for Reports
#286 Added Github Issue/PR Template
#281 PR-2269 Show the Unit in Manage Analyses View
#279 Allow external Python library functions to be used in Calculation Formulas
#279 Calculation formula test widgets
#279 PR-2154 New ar add form
Changed
#385 PR-2309 Unnecessary loops were done in instrument listing views
#369 Let DateTimeField setter accept datetime.datetime objects and convert them
#362 Add “Methods” column and hide unused columns in Analysis Services list
#353 Remove deprecation warnings
#338 Preserve Analysis Request order when adding into Worksheet
#338 Analyses sorted by priority in Add Analyses view
#333 Display analyses sorted by sortkey in results report
#331 Sort analyses lists by sortkey as default
#321 Sticker’s autoprint generates PDF instead of browser’s print dialog
#312 Worksheet: “Print” does not display/print partial results
#306 PR-2077 Better usability of Clients lists for sites with many users
#298 PR-2246 Implemented ProxyField to fix data duplication between ARs and Samples
Fixed
#419 ‘getLastVerificator’ function of Abstract Analyses fails when there is no Verificator.
#388 Unable to get the portal object when digesting/creating results report
#387 ClientWorkflowAction object has no attribute ‘portal_url’ when publishing multiple ARs
#386 PR-2313 UniqueFieldValidator: Encode value to utf-8 before passing it to the catalog
#386 PR-2312 IDServer: Fixed default split length value
#386 PR-2311 Fix ID Server to handle a flushed storage or existing IDs with the same prefix
#385 PR-2309 Some objects were missed in instrument listing views
#384 PR-2306 Do not use localized dates for control chart as it breaks the controlchart.js datetime parser
#382 PR-2305 TypeError in Analysis Specification category expansion
#380 PR-2303 UnicodeDecodeError if title field validator
#379 Missing “Instrument-Import-Interface” relationship
#375 Dependencies error in Manage Analyses view
#371 Reflex rules don’t have ‘inactive_state’ values set
#365 LIMS installation fails during setting client permissions in bika_setup
#364 Error on Manage Results view while adding new Analyses from different Category
#363 PR-2293 Add CCEmails to recipients for Analysis Request publication reports
#352 Traceback on listings where objects follow the bika_inactive_workflow
#323 Allow IDServer to correctly allocate IDs for new attachments (add Attachment to portal_catalog)
#344 PR-2273. Ensure no counters in the number generator before initialising id server
#343 PR-2281 Fix publication preferences for CC Contacts
#340 TypeError: “Can’t pickle objects in acquisition wrappers” (Calculation)
#339 Index not found warnings in bika listing
#337 Error when adding reference analysis in a Worksheet
#336 Accreditation Portlet renders an error message for anonymous users
#335 The Lab Name is always set to “Laboratory” after reinstallation
#334 TypeError (setRequestId, unexpected keyword argument) on AR Creation
#330 Show action buttons when sorting by column in listings
#318 PR-2205 Conditional Email Notification on Analysis Request retract
#316 Small fixes related with i18n domain in Worksheet’s print fixtures
#314 ‘SamplingDate’ and ‘DateSampled’ fields of AR and Sample objects don’t behave properly
#313 The PDF generated for stickers doesn’t have the right page dimensions
#311 PR-1931 Fixed Link User to Contact: LDAP Users not found
#309 PR-2233 Infinite Recursion on Report Publication.
#309 PR-2130 Copied ARs are created in random order.
#308 Analysis Service’ interim fields not shown
#307 Fix sorting of Analysis Services list and disable manual sorting
#304 PR-2081 Fixed multiple partition creation from ARTemplate
#304 PR-2080 Batch Book raises an Error if the Batch inherits from 2 ARs
#304 PR-2053 Computed Sample Field “SampleTypeUID” does not check if a SampleType is set
#304 PR-2017 Fixed BatchID getter
#304 PR-1946 Showing Verified Worksheets under all
#299 PR-1931 Fixed Link User to Contact: LDAP Users not found
#298 PR-1932 AttributeError: ‘bika_setup’ on login on a new Plone site w/o bika.lims installed
#297 PR-2102 Inline rendered attachments are not displayed in rendered PDF
#296 PR-2093 Sort order in Bika Setup Listings
#294 PR-2016 Convert UDL and LDL values to string before copy
#293 Fix analysis_workflow permissions for Field Analysis Results
#284 PR-1917 Solved WF Translation issues and fixed WF Action Buttons in Bika Listings
#283 PR-2252 Traceback if the title contains braces on content creation
#282 PR-2266 Instrument Calibration Table fixes
#280 PR-2271 Setting 2 or more CCContacts in AR view produces a Traceback on Save
1.0.0 (2017-10-13)
Added
#269 Added IFrontPageAdapter, to make front page custom-redirections easier
#250 Sanitize tool to fix wrong creation dates for old analyses
Fixed
#272 Unknown sort_on index (getCategoryTitle) in Worksheet’s Add Analyses view
#270 ParseError in Reference Widget Search. Query contains only common words
#266 Worksheet column appears blank in Aggregated List of Analyses
#265 ValueError in productivity report
#264 Fix permissions error on site install
#262 DateSampled does not appear to users other than labman or administrator
#261 Checking async processes fails due to Privileges of Client Contact
#259 Error when saving and Analysis Request via the Save button
#258 Sorting Analysis Requests by progress column does not work
#257 AttributeError (getRequestUID) when submitting duplicate analyses
#255 Client contacts cannot see Analysis Requests if department filtering is enabled
#249 Unable to reinstate cancelled Analysis Requests
Security
#256 Restrict the linkeage of client contacts to Plone users with Client role only
#254 Anonymous users have access to restricted objects
3.2.0.1709-a900fe5 (2017-09-06)
Added
#244 Asynchronous creation of Analysis Requests
#242 Visibility of automatically created analyses because of reflex rule actions
#241 Fine-grained visibility of analyses in results reports and client views
#237 Performance optimizations in Analysis Request creation
#236 Progress bar column in Analysis Requests list and Analyses number
#233 Background color change on mouse over for fields table from ARAdd view
#232 Display Priority in Analyses Add View from Worksheet and allow to sort
#229 Highlight rows in bikalisting on mouse over
#157 Catalog for productivity/management reports to make them faster
Changed
#218 Render barcodes as bitmap images by default
#212 Allow direct verification of analyses with dependencies in manage results view
#213 Sampling Date and Date Sampled fields refactoring to avoid confusions
#228 Translations updated
#224 Remove warnings and unuseful elses in Analysis Request setters
#193 Render transition buttons only if ‘show_workflow_action’ in view is true
#191 Code sanitize to make Analysis Specifications folder to load faster
Fixed
#248 Search using Client not working in Add Analyses (Worksheet)
#247 Sample Type missing in analysis view for rejected samples
#246 ZeroDivisionError when calculating progress
#245 Missing Lab Contacts tab in Departments View
#240 Unable to modify Sample point field in Analysis Request view
#235 Fix Jsi18n adapter conflict
#239 Sort on column or index is not valid
#231 Partition inconsistences on secondary Analysis Requests
#230 Priority not showing on Analysis Request listing
#227 Malformed messages and/or html make i18ndude to fail
#226 Action buttons are not translated
#225 State inconsistencies when adding an analysis into a previous Analysis Request
#223 TypeError when Analysis Service’s exponential format precision is None
#221 Filters by Service, Category and Client do not work when adding Analyses into a Worksheet
#220 Not all departments are displayed when creating a new Lab Contact
#219 When a Sample Point is modified in AR view, it does not get printed in report
#217 Setupdata import fixes
#216 Results reports appear truncated
#215 All Samples are displayed in Analysis Request Add form, regardless of client
#214 Status inconsistences in Analyses in secondary Analysis Requests
#211 Sorting by columns in batches is not working
#210 In some cases, the sampler displayed in results reports is wrong
#209 AttributeError: ‘NoneType’ object has no attribute ‘getPrefix’ in Analysis Request add view
#208 Rendering of plone.abovecontent in bika.lims.instrument_qc_failures_viewlet fails
#206 Unknown sort_on index (getClientTitle) in Add Analyses view from Worksheet
#202 Once a result is set, the checkbox is automatically checked, but action buttons do not appear
#201 Results interpretation field not updated after verification or prepublish
#200 Dependent analyses don’t get selected when analysis with dependents is choosen in AR Add view
#199 AttributeError when adding a Blank in a Worksheet because of Service without category
#198 The assignment of a Calculation to a Method doesn’t get saved apparently, but does
#196 Error invalidating a published test report (retract_ar action)
#195 List of Analysis Request Templates appears empty after adding a Sampling Round Template
#192 Date Sampled is not displayed in Analysis Request View
#190 Bad time formatting on Analysis Request creation within a Sampling Round
#189 Bad time formatting when creating a secondary Analysis Request
#187 After verification, department managers are not updated in results report anymore
#185 Analysis services list not sorted by name
#183 Decimals rounding is not working as expected when uncertainties are set
#181 Client contact fields are not populated in Sampling Round add form
#179 Wrong values for “Sampling for” and “Sampler for scheduled sampling” fields after AR creation
#178 Sampler information is wrong in results reports
#175 Changes in “Manage Analyses” from “Analysis Request” have no effect
#173 NameError (global name ‘safe_unicode’ is not defined) in Analysis Request Add view
#171 Error printing contact address
#170 Index error while creating an Analysis Request due to empty Profile
#169 ValueError (Unterminated string) in Analysis Request Add view
#168 AttributeError ‘getBatch’ after generating barcode
#166 Analyses don’t get saved when creating an Analysis Request Template
#165 AttributeError in Bika Setup while getting Analysis Services vocabulary
#164 AttributeError on Data Import: ‘NoneType’ object has no attribute ‘Import’
#161 TypeError from HistoryAwareReferenceField while displaying error message
#159 Date published is missing on data pulled through API
#158 Date of collection greater than date received on Sample rejection report
#156 Calculation selection list in Analysis Service edit view doesn’t get displayed
#155 Error while rejecting an Analysis Request. Unsuccessful AJAX call
3.2.0.1706-315362b (2017-06-30)
Added
#146 Stickers to PDF and new sticker 2”x1” (50.8mm x 25.4mm) with barcode 3of9
#152 Caching to make productivity/management reports to load faster
Changed
#150 Dynamic loading of allowed transitions in lists
#145 Workflow refactoring: prepublish
#144 Workflow refactoring: publish
Fixed
#154 AttributeError on upgrade step v1705: getDepartmentUID
#151 State titles not displayed in listings
#149 Decimal point not visible after edition
#143 Fix AttributeError ‘getProvince’ and ‘getDistrict’ in Analysis Requests view
#142 AttributeError on publish: ‘getDigest’
#141 AttributeError on upgrade.v3_2_0_1705: ‘NoneType’ object has no attribute ‘aq_parent’
3.2.0.1706-baed368 (2017-06-21)
Added
#133 Multiple use of instrument control in Worksheets
Fixed
#139 Reference migration fails in 1705 upgrade
#138 Error on publishing when contact’s full name is empty
#137 IndexError while notifying rejection: list index out of range
#136 Worksheets number not working in Dashboard
#135 Fix string formatting error in UIDReferenceField
#132 ValueError in worksheets list. No JSON object could be decoded
#131 “Show more” is missing on verified worksheets listing
#129 Unsupported operand type in Samples view
3.2.0.1706-afc4725 (2017-06-12)
Fixed
#128 TypeError in Analysis Request’ manage results view: object of type ‘Missing.Value’ has no len()
#127 AttributeError while copying Service: ‘float’ object has no attribute ‘split’
#126 AttributeError during results publish: getObject
#123 Analysis Request state inconsistences after upgrade step v3.2.0.1705
#122 ValueError on results file import
3.2.0.1706-f32494f (2017-06-08)
Added
#120 Add a field in Bika Setup to set the default Number of ARs to add
#88 GeneXpert Results import interface
#85 Sticker for batch
#84 Sticker for worksheet
#83 Adapter to make the generation of custom IDs easier
#82 Added a method the get always the client in stickers
#75 Wildcards on searching lists
Changed
#106 Predigest publish data
#103 Prevent the creation of multiple attachment objects on results import
#101 Performance improvement. Remove Html Field from AR Report
#100 Performance improvement. Replacement of FileField by BlobField
#97 Performance improvement. Removal of versionable content types
#95 Performance improvement. Analysis structure and relationship with Analysis Service refactored
#58 Defaulting client contact in Analysis Request Add view
Fixed
#118 Results import throwing an error
#117 Results publishing not working
#113 Biohazard symbol blocks the sticker making it impossible to be read
#111 Fix error while submitting reference analyses
#109 Remarks in analyses (manage results) are not displayed
#105 System doesn’t save AR when selected analyses are from a department to which current user has no privileges
#104 ReferenceException while creating Analysis Request: invalid target UID
#99 Instrument’s getReferenceAnalyses. bika.lims.instrument_qc_failures_viewlet fails
#94 Site Search no longer searching Analysis Requests
#93 Analyses did not get reindexed after recalculating results during import
#92 Analyses disappearing on sorting by date verified
#91 KeyError on Samples view: ‘getSamplingDate’
#90 AttributeError on Analysis Request submission: ‘NoneType’ object has no attribute ‘getDepartment’
#89 Analysis to be verified not showing results
#87 AttributeError in analyses list: ‘getNumberOfVerifications’
#82 JS error while checking for rejection reasons in client view
#80 CatalogError: Unknown sort_on index (Priority)
#79 ValueError in Bika’s DateTimeWidget
#78 CatalogError in Batch View. Unknown sort_on index (BatchID)
#77 ValueError in AR Add: time data ‘2016-05-10’ does not match format ‘%Y-%m-%d %H:%M’
#76 AttributeError in Client ARs view: bika_catalog
#74 AttributeError: ‘NoneType’ object has no attribute ‘getCalculation’
#73 Analyses disappearing on sorting by date verified
#72 Cancelled analyses appearing in aggregated list of analyses
#71 AttributeError on publish: ‘getRequestID’
#70 The number of pending verifications displayed in analyses list is wrong
#69 Selecting a sticker template in AR’s sticker preview does nothing
#68 Error while listing analyses in Analysis Request details view
#67 Show more button is not working in Analysis Services list
#66 TypeError in Worksheets view. TypeError: ‘list’ object is not callable
#65 Fix error when an object has no status defined while listing in WS
#64 AttributeError: ‘NoneType’ object has no attribute ‘getInstrumentEntryOfResults
#63 If login failed, setDepartmentCookies throws an IndexError
#61 Show more button is not working in Worksheet’s Add Analyses view
#60 Index Error in Analysis Request Add view
#59 AttributeError (NoneType) in service.getInstruments()
#57 Select all departments option is not working
#56 Client and District not sortable in Analysis Requests listing
#52 System throwing error on opening “Verified” folder
3.2.0.1703-0f28b48 (2017-03-30)
Added
#39 Performance improvement. Make use of brains in Worksheets lists
#32 Performance improvement. Catalog for analyses and make use of brains
Fixed
#48 Error on AR publish. Global name ‘traceback’ is not defined (getServiceUsingQuery)
#47 Error in CloneAR during retraction. AttributeError: setRequestID
#46 Error rejecting an Analysis Request
#45 CatalogError in Dashboard. Unknown sort_on index (created) in view.get_sections()
#44 AttributeError in worksheets view
#43 Sort not working on all lists
#41 No Service found for UID None
#40 Client Sample ID is missing in Analysis Request Add view
3.2.0.1703-1c2913e (2017-03-20)
Added
#33 New Analysis Request Add form outside client
Fixed
#37 Publish results throwing an error
#36 System is not printing labels automatically
#35 Equipment interface is not working
#34 Results import submission error
3.2.0.1703-e596f2d (2017-03-08)
Added
#25 Instrument import without user intervention
#22 Date Tested range filter on lists
#20 Added filter bar in Aggregated list of analyses
HEALTH-364: Added country/province/district columns to client listings
Add buttons to export lists to csv and xml formats
Additional “printed” workflow for analysis requests once published
Changed
#12 Multi-method assignment and Virtual-Real Instrument correspondence
#11 Restrictions in manual instrument import - Instruments and interfaces
#10 Performance improvement. Catalog for Analysis Requests and use of brains
Fixed
#26 Publishing bug due to SMTP Authentication
#24 Condition rule being affected on duplicate samples
#23 Date of Birth: crash if date is before 1900
#21 Rejection option does not appear if only one column in AR Add form
#19 Inconsistent status of Analysis in WS after AR rejection
#13 Number of verifications no longer taking effect
HEALTH-568: TaqMan 96 interface not working well
HEALTH-567: Nuclisens interface not working well
3.2.0.1701-26f2c4b (2017-01-17)
LIMS-2477: Reference Analysis has no dependencies; remove guard that assumes it does
LIMS-2465: Not possible to translate Bika Listing Table Workflow Action Buttons
LIMS-1391: Add configurable identifier types (CAS# for AnalysisService)
LIMS-2466: Central Instrument Location Management
LIMS-2357: Custom Landing Page and Link to switch between the Front Page and Dashboard
LIMS-2341: Cleanup and format default Multi-AR COA
LIMS-2455: Contact/Login Linkage Behavior
LIMS-2456: Restrict duplicate slots in worksheet templates to routine analyses only.
LIMS-2447: getDatePublished index not indexed correctly at time of AR publication
LIMS-2404: AR list in batches permitted sampling without Sampler and Sampling date provided
LIMS-2380: ARs are created in correct order (order of columns in ar-create form)
LIMS-2394: Calculation failure in worksheets. TDS Calc misfires again.
LIMS-2391: Use source analysis’s sample ID in duplicate analysis IDs
LIMS-2351: Field analyses without results do not prevent Samples from being received
LIMS-2366: Workflow. AR stays in Received state with all Analyses in To be Verifie
LIMS-2384: ARImport: Workflow state of imported ARs and their Analyses not synchronised.
LIMS-2369: Workflow. Sampler and Date Sampled should be compulsory
LIMS-2355: Unable to view dormant/active filters in some bika_setup pages
LIMS-2344: Fix some UI javascript failures when viewing ARs
LIMS-2319: AR Add: Deleting a selected CC Contact corrupts the UID of reference widgets
LIMS-2325: Allow SampleTypes to be linked with Client Sample Points
LIMS-2324: WS export to the LaChat Quick Chem FIA
LIMS-2298: Add filter in Clients list
LIMS-2299: Add ui for editing ar_count in all analysisrequest lists
LIMS-2268: Instrument Interface. Vista Pro Simultaneous ICP, bi-directional CSV
LIMS-2261: Cannot create analysis request
LIMS-1562: Using a Sample Round. Basic form and printed form
LIMS-2266: Crating partitions through Add form, doesn’t create partitions.
HEALTH-394: Sample sticker layout. 2 new sticker layouts, 2 stickers per row
LIMS-2032: AS Methods initialise with 1st available Instrument (loading setup data)
LIMS-2014: I can only select a Default Method for an AS if Manual results capture is on
LIMS-2181: An analysis is not stopped from using an invalid instrument
HEALTH-310: Implemented Nuclisens EasyQ instrument importer
HEALTH-319: Instrument. Roche Cobas Taqman 96
LIMS-2091: Table Column Display options Everywhere
LIMS-2207: Indentation in analysisrequests.py
LIMS-2208: WinescanCSVParser class instance variable misspelling
LIMS-1832: New Results Template, COA. Multiple ARs in columns
LIMS-2148: Unable to sort Bika Listing tables
LIMS-1774: Shiny graphs for result ranges
Replacement of pagination by ‘Show more’ in tables makes the app faster
Add Bika LIMS TAL report reference in reports preview
Simplify instrument interface creation for basic CSV files
Scheduled sampling functionality added
LIMS-2257: Scheduled sampling
LIMS-2255: Switch to Chameleon (five.pt) for rendering TAL templates
System-wide filter by department
Allow to assign a lab contact to more than one department
Multi-verification of analyses, with different verification types
Add option to allow multi-approval (multi-verification) of results
Added Analyses section in the Dashboard
Add option to allow labman to self-verify analysis results
Replacement of pagination by ‘Show more’ in tables makes the app faster
Add Bika LIMS TAL report reference in reports preview
Simplify instrument interface creation for basic CSV files
3.1.13 (2016-12-28)
LIMS-2299: Add ui for editing ar_count in all analysisrequest lists
Removed commented HTML that was causing Chameleon to choke when adding ARs.
3.1.12 (2016-12-15)
HEALTH-569 Bar code printing not working on sample registration
Pinned CairoSVG to 1.0.20 (support for Python 2 removed in later versions)
3.1.11 (2016-04-22)
LIMS-2252: Partitions not submitted when creating AR if the form is submitted before partitions are calculated
LIMS-2223: Saving a recordswidget as hidden fails
LIMS-2225: Formatted results not displayed properly in Worksheet’s transposed layout
LIMS-2001: Duplicate for one analysis only
LIMS-1809: Typos. Perdiod an missing spaces
LIMS-2221: Decimal mark doesn’t work in Sci Notation
LIMS-2219: Using a SciNotation diferent from ‘aE+b / aE-b’ throws an error
LIMS-2220: Raw display of exponential notations in results manage views
LIMS-2216: Results below LDL are not displayed in reports
LIMS-2217: Specifications are not set in analyses on Analysis Request creation
LIMS-2218: Result is replaced by min or max specs when “<Min” or “>Max” fields are used
LIMS-2215: Decimal mark not working
LIMS-2203: ‘Comma’ as decimal mark doesnt work
LIMS-2212: Sampling round- Sampling round templates show all system analysis request templates
LIMS-2209: error in manage analyises
LIMS-1917: Inconsistencies related to significant digits in uncertainties
LIMS-2015: Column spacing on Client look-up
LIMS-1807: Validation for Start Date - End date relationship while creating invoices and price lists
LIMS-1991: Sort Order for Analysis Categories and Services
LIMS-1521: Date verified column for AR lists
LIMS-2194: Error when submitting a result
LIMS-2169: Cannot start instance
WINE-125: Client users receive unauthorized when viewing some published ARs
3.1.10 (2016-01-13)
Updated Plone to 4.3.7
Dashboard: replace multi-bar charts by stacked-bar charts
LIMS-2177: template_set error when no template has been selected
HEALTH-410: AR Create. Auto-complete Contact field if only 1
LIMS-2175: “NaN” is shown automatically for result fields that have AS with “LDL” enabled and then an error is shown after submitting a result
LIMS-1917: Inconsistencies related to significant digits in uncertainties
LIMS-2143: Statements vs Invoices
LIMS-1989: Retracting a published AR fails if one or more ASs has been retracted before publishing
LIMS-2071: Can’t generate Invoice Batch/Monthly Statements
WINE-71: Instrument. BBK WS export to FIA fails
WINE-72: Instrument. BBK WineScan Auto Import fails
WINE-58: Instrument. BBK FIAStar import fails
WINE-76: WineScan FT120 Import warnings incorrect?
LIMS-1906: Spaces should be stripped out of the keywords coming from the Instrument
LIMS-2117: Analysis Categories don’t expand on Analysis Specification creation
LIMS-1933: Regression: Selecting secondary AR in client batches, fails.
LIMS-2075: Ensure hiding of pricing information when disabled in site-setup
LIMS-2081: AR Batch Import WorkflowException after edit
LIMS-2106: Attribute error when creating AR inside batch with no client.
LIMS-2080: Correctly interpret default (empty) values in ARImport CSV file
LIMS-2115: Error rises when saving a Calculation
LIMS-2116: JSONAPI throws an UnicodeDecodeError
LIMS-2114: AR Import with Profiles, no Analyses are created
LIMS-2132: Reference Analyses got the same ID
LIMS-2133: Once in a while, specs var is going empty in results reports
LIMS-2136: Site Error on AR Verification
LIMS-2121: Fix possible Horiba ICP csv handling errors
LIMS-2042: Improving Horiba ICP to avoid Element Symbols as keywords
LIMS-2123: Analysis Categories don’t expand in Worksheet Templates
LIMS-1993: Existing Sample look-up for AR Create in Batch does not work
LIMS-2124: QR missing on sticker preview
LIMS-2147: Add ARImport schema fields when creating ARs
LIMS-409: ShowPrices setting was getting ignored in some contexts
LIMS-2062: Cancelled ARs no longer appear in analysisrequest folder listings
LIMS-2076: Cancelled batches appear in listing views
LIMS-2154: Hide inactive ARs from BatchBook view
LIMS-2134: Inactive services appear in AR Create
LIMS-2139: WS Blank and Control Selection renderes whole page
LIMS-2156: Ignore blank index values when calculating ReferenceAnalysesGroupID
LIMS-2157: Cancelled ARs appear in AR listing inside Batches
LIMS-2042: Horiba ICP: Missing ‘DefaultResult’ for imported rows
LIMS-2030: Assign ARs in alphabetical ID order to WS
LIMS-2167: Cannot assign a QC analysis to an invalid instrument
LIMS-2067: Prevent initial method/instrument query for each analysis
WINE-82: Ignore invalid entry in Sample field during AR creation
LIMS-1717: Workflow transitions in edit context do not take effect
WINE-111: Do not attempt formatting of ‘nan’ analysis result values
WINE-114: Some users cannot view published ARs (unauthorised)
WINE-122: Transposed worksheet layout failed while rendering empty slots
LIMS-2149: Missing analyses can cause error accessing worksheet
LIMS-1521: Date verified column for AR lists
LIMS-2015: Column spacing on Client look-up
LIMS-1807: Validation for Start Date - End Date relationship
3.1.9 (2015-10-8)
LIMS-2068: LIMS-2068 Urgent. Analysis Catgories don’t expand
LIMS-1875: Able to deactivate instruments and reference samples without logging in
LIMS-2049: Displaying lists doesn’t work as expected in 319
LIMS-1908: Navigation tree order
LIMS-1543: Add “Security Seal Intact Y/N” checkbox for partition container
LIMS-1544: Add “File attachment” field on Sample Point
LIMS-1949: Enviromental conditions
LIMS-1549: Sampling Round Templates privileges and permissions
LIMS-1564: Cancelling a Sampling Round
LIMS-2020: Add Sampling Round - Department not available for selection
LIMS-1545: Add “Composite Y/N” checkbox on AR Template
LIMS-1547: AR Templates tab inside Sampling Round Template
LIMS-1561: Editing a Sampling Round
LIMS-1558: Creating Sampling Rounds
LIMS-1965: Modified default navtree order for new installations
LIMS-1987: AR Invoice tab should not be shown if pricing is toggled off
LIMS-1523: Site Error when transitioning AR from ‘Manage Analyses’ or ‘Log’ tab
LIMS-1970: Analyses with AR Specifications not displayed properly in AR Add form
LIMS-1969: AR Add error when “Categorise analysis services” is disabled
LIMS-1397: Fix Client Title accessor to prevent catalog error when data is imported
LIMS-1996: On new system with no instrument data is difficult to get going.
LIMS-2005: Click on Validations tab of Instruments it give error
LIMS-1806: Instrument Interface. AQ2. Seal Analytical - Error
LIMS-2002: Error creating Analysis Requests from batch.
LIMS-1996: On new system with no instrument data it is difficult to get going. The warnings could be confusing
LIMS-1312: Transposed Worksheet view, ARs in columns
LIMS-1760: Customised AR Import spreadsheets (refactored, support importing to Batch)
LIMS-1548: Client-specific Sampling Round Templates
LIMS-1546: Sampling Round Template Creation and Edit view
LIMS-1944: Prevent concurrent form submissions from clobbering each other’s results
LIMS-1930: AssertionError: Having an orphan size, higher than batch size is undefined
LIMS-1959: Not possible to create an AR
LIMS-1956: Error upgrading to 319
LIMS-1934: Hyperlinks in invoices
LIMS-1943: Stickers preview and custom stickers templates support
LIMS-1855: Small Sticker layout. QR-code capabilities
LIMS-1627: Pricing per Analysis Profile
HEALTH-279: AS IDs to be near top of page. Columns in AS list
LIMS-1625: Instrument tab titles and headers do not correspond
LIMS-1924: Instrument tab very miss-titled. Internal Calibration Tests
LIMS-1922: Instrument out of date typo and improvement
HEALTH-175: Supplier does not resolve on Instrument view page
LIMS-1887: uniquefield validator doesn’t work properly
LIMS-1869: Not possible to create an Analysis Request
LIMS-1867: Auto-header, auto-footer and auto-pagination in results reports
LIMS-1743: Reports: ISO (A4) or ANSI (letter) pdf report size
LIMS-1695: Invoice export function missing
LIMS-1812: Use asynchronous requests for expanding categories in listings
LIMS-1811: Refactor AR Add form Javascript, and related code.
LIMS-1818: Instrument Interface. Eltra CS-2000
LIMS-1817: Instrument Interface. Rigaku Supermini XRF
New System Dashboard for LabManagers and Admins
3.1.8.3 (2015-10-01)
LIMS-1755: PDF writer should be using a world-writeable tmp location
LIMS-2041: Resolve ${analysis_keyword) in instrument import alert.
LIMS-2041: Resolve translation syntax error in instrument import alert
LIMS-1933: Secondary Sample selection in Client Batches does not locate samples
3.1.8.2 (2015-09-27)
LIMS-1996: On new system with no instrument data is difficult to get going.
LIMS-1760: Customised AR Import spreadsheets (refactored, support importing to Batch)
LIMS-1930: AssertionError: Having an orphan size, higher than batch size is undefined
LIMS-1818: Instrument Interface. Eltra CS-2000
LIMS-1817: Instrument Interface. Rigaku Supermini XRF
LIMS-2037: Gracefully anticipate missing analysis workflow history
LIMS-2035: Prevent Weasyprint flooding due to asyncronous publish
3.1.8.1 (2015-06-23)
LIMS-1806: Instrument Interface. AQ2. Seal Analytical - Error
LIMS-1760: Customised AR Import spreadsheets (refactored, support importing to Batch)
Fix portlets.xml for Plone 4.3.6 compatibility
3.1.8 (2015-06-03)
LIMS-1923: Typo InstrumentCalibration
HEALTH-287: Hyperlink in Instrument messages
LIMS-1929: Translation error on Instrument Document page
LIMS-1928 Asset Number on Instruments’ Certificate tab should use Instrument’s default
LIMS-1929: Translation error on Instrument Document page
LIMS-1773: Instrument. Thermo Fisher ELISA Spectrophotometer
LIMS-1697: Error updating bika.lims 317 to 318 via quickinstaller
LIMS-1820: QC Graphs DateTime’s X-Axis not well sorted
LIMS-280 : System IDs starting from a specific value
LIMS-1819: Bika LIMS in footer, not Bika Lab Systems
LIMS-1808: Uncertainty calculation on DL
LIMS-1522: Site Error adding display columns to sorted AR list
LIMS-1705: Invoices. Currency unit overcooked
LIMS-1806: Instrument Interface. AQ2. Seal Analytical
LIMS-1770: FIAStar import ‘no header’
LIMS-1771: Instrument. Scil Vet abc Plus
LIMS-1772: Instrument. VetScan VS2
LIMS-1507: Bika must notify why is not possible to publish an AR
LIMS-1805: Instrument Interface. Horiba JY ICP
LIMS-1710: UnicodeEncode error while creating an Invoice from AR view
WINE-44: Sample stickers uses Partition ID only if ShowPartitions option is enabled
LIMS-1634: AR Import fields (ClientRef, ClientSid) not importing correctly
LIMS-1474: Disposed date is not shown in Sample View
LIMS-1779: Results report new fields and improvements
LIMS-1775: Allow to select LDL or UDL defaults in results with readonly mode
LIMS-1769: Allow to use LDL and UDL in calculations.
LIMS-1700: Lower and Upper Detection Limits (LDL/UDL). Allow manual input
LIMS-1379: Allow manual uncertainty value input
LIMS-1324: Allow to hide analyses in results reports
LIMS-1754: Easy install for LIMS’ add-ons was not possible
LIMS-1741: Fixed unwanted overlay when trying to save supply order
LIMS-1748: Error in adding supply order when a product has no price
LIMS-1745: Retracted analyses in duplicates
LIMS-1629: Pdf reports should split analysis results in different pages according to the lab department
Some new ID Generator’s features, as the possibility of select the separator type
LIMS-1738: Regression. ‘NoneType’ object has no attribute ‘getResultsRangeDict’
LIMS-1739: Error with results interpretation field of an AR lacking departments
LIMS-1740: Error when trying to view any Sample
LIMS-1724: Fixed missing start and end dates on reports
LIMS-1628: There should be a results interpretation field per lab department
LIMS-1737: Error when adding pricelists of lab products with no volume and unit
LIMS-1696: Decimal mark conversion is not working with “<0,002” results type
LIMS-1729: Analysis Specification Not applying to Sample when Selected
LIMS-1507: Do not cause exception on SMTPServerDisconnect when publishing AR results.
3.1.7 (2015-02-26)
LIMS-1693: Error trying to save a new AR
LIMS-1570: Instrument interface: Roche Cobas Taqman 48
LIMS-1520: Allow to invalidate verified ARs
LIMS-1690: Typo. Instrument page
LIMS-1688: After AR invalidation, ARs list throws an error
LIMS-1569: Instrument interface: Beckman Coulter Access 2
LIMS-1689: Error while creating a new invoice batch
LIMS-1266: Sampling date format error
LIMS-1365: Batch search parameters on Work sheets/Work sheets insides Batches
LIMS-1428: After receiving a sample with Sampling Workflow enable is not possible to input results
LIMS-1540: When accent characters are used in a “Sample Type” name, it is not possible to create a new AR
LIMS-1617: Error with bin/test
LIMS-1571: Instrument interface: Sysmex XS-1000i
LIMS-1574: Fixed AR and Analysis attachments
LIMS-1670: Fixed windows incompatibility in TAL (referencewidget.pt)
LIMS-1594: Added option to select landing page for clients in configuration registry
LIMS-1594: Re-ordered tabs on Client home page
LIMS-1520: Allow to invalidate verified ARs
LIMS-1539: Printable Worksheets. In both AR by row or column orientations
LIMS-1199: Worksheet totals in WS lists
LIMS-257: Set Blank and Warning icons in Reference Sample main view
LIMS-1636: Batch Sample View crash
LIMS-1524: Invalidate email does not have variables populated
LIMS-1572: Instrument interface: Sysmex XS-500i
LIMS-1575: Thermo Arena 20XT
LIMS-1423: Save details when AR workflow action kicked off
LIMS-1624: Import default test.xlsx fails
LIMS-1614: Error when selecting Analysis Administration Tab after receiving a sample with Sampling Workflow enabled
LIMS-1605: Tescan TIMA interface
LIMS-1604: BioDrop uLite interface
LIMS-1603: Life Technologies Qubit interface
LIMS-1517: Storage field tag untranslated?
LIMS-1518: Storage Location table
LIMS-1527: CC Contact on AR view (edit) offers all contacts in system
LIMS-1536: Add button [Add], to alow quickly addings in referencewidget
LIMS-1587: Better support for extension of custom sample labels
LIMS-1622: Version Check does not correctly check cache
LIMS-1623: Implement bika-frontpage as a BrowserView
3.1.6 (2014-12-17)
LIMS-1530: Scrambled Analysis Category order in Published Results
LIMS-1529: Error while inserting an AR with container-based partitioning is required
LIMS-1460: Additional field in AR for comments or results interpretation
LIMS-1441: An error message related to partitions unit is shown when selecting analysis during AR creation
LIMS-1470: AS Setup. File attachment field tag is missing
LIMS-1422: Results doesn’t display yes/no once verified but 1 or 0
LIMS-1486: Typos in instrument messages
LIMS-1498: Published Results not Showing for Logged Clients
LIMS-1445: Scientific names should be written in italics in published reports
LIMS-1389: Units in results publishing should allow super(sub)script format, for example in cm2 or m3
LIMS-1500: Alere Pima’s Instrument Interfice
LIMS-1457: Exponential notation in published AR pdf should be formatted like a×10^b instead of ae^+b
LIMS-1334: Calculate result precision from Uncertainty value
LIMS-1446: After retracting a published AR the Sample gets cancelled
LIMS-1390: More workflow for Batches
LIMS-1378: Bulking up Batches
LIMS-1479: new-version and upgrade-steps should be python viewlets
LIMS-1362: File attachment uploads to Batches
LIMS-1404: New Batch attributes (and their integration with existing ones on Batch views)
LIMS-1467: Sample Point Lookup doesn’t work on AR modify
LIMS-1363: Batches per Client
LIMS-1405: New Sample and AR attributes
LIMS-1085: Allow Clients to add Attachments to ARs
LIMS-1444: In AR published report accredited analysis services are not marked as accredited
LIMS-1443: In published reports the publishing date is not shown in the pdf
LIMS-1420: Status filter is not kept after moving to next page
LIMS-1442: Sample Type is not filtred by Sample Point
LIMS-1448: Reports: when you click on “Analysis turnaround time” displays others
LIMS-1440: Error when trying to publish with analysis from different categories
LIMS-1459: Error when checking instrument validity in manage_results
LIMS-1430: Create an AR from batch allows you to introduce a non existent Client and Contacts don’t work properly
After modifying analysis Category, reindex category name and UID for all subordinate analyses
Setup data import improvements and fixes
Simplify installation with a custom Plone overview and add site
3.1.5 (2014-10-06)
LIMS-1082: Report Barcode. Was images for pdf/print reports etc
LIMS-1159: reapply fix for samplepoint visibility
LIMS-1325: WSTemplate loading incompatible reference analyses
LIMS-1333: Batch label replace with standard Plone keyword widget
LIMS-1335: Reference Definitions don’t sort alphabetically on WS Template lay-outs
LIMS-1345: Analysis profiles don’t sort
LIMS-1347: Analysis/AR background colour to be different to for Receive and To be Sampled
LIMS-1360: Number of analyses in ARs folder view
LIMS-1374: Auto label printing does not happen for an AR drop-down receive
LIMS-1377: Error when trying to publish after updating branch hotfix/next or develop
LIMS-1378: Add AR/Sample default fields to Batch
LIMS-1395: front page issue tracker url
LIMS-1402: If no date is chosen, it will never expire.” not been accomplished
LIMS-1416: If a sample point has a default sample type the field is not pulled automatically during AR template creation
LIMS-1425: Verify Workflow (bika_listing) recursion
added ‘getusers’ method to JSON API
Added ‘remove’ method to JSON API
Added AR ‘Copy to new’ action in more contexts
Added basic handling of custom Sample Preparation Workflows
Added decimal mark configuration for result reports
Added help info regards to new templates creation
Added IAcquireFieldDefaults - acquire field defaults through acquisition
Added IATWidgetVisibility - runtime show/hide of AT edit/view widgets
Added watermark on invalid reports
Added watermark on provisional reports
Alert panel when upgrades are available
All relevant specification ranges are persisted when copying ARs or adding analyses
Allow comma entry in numbers for e.g. German users
Bika LIMS javascripts refactoring and optimization
Fix ZeroDivisionError in variation calculation for DuplicateAnalysis
Fixed spreadsheet load errors in Windows.
Fixed template rendering errors in Windows
JSONAPI update: always use field mutator if available
JSONAPI: Added ‘remove’ and ‘getusers’ methods.
Refactored ARSpecs, and added ResultsRange field to the AR
3.1.4.1 (2014-07-24)
3.1.4 release was broken, simple ARs could not be created.
LIMS-1339: Published reports should use “±” symbol instead of “+/-”
LIMS-1327: Instrument from worksheet
LIMS-1328: Instrument calibration test graphs do not work on multiple samples
LIMS-1347: Analysis/AR background colour to be different to for Receive and To be Sampled
LIMS-1353: Analyses don’t sort in Attachment look-up
- #eview for Results reports
Single/Multi-AR preview
Allows to cancel the pre-publish/publish process
Allows to make visible/invisible the QC analyses
Allows to add new custom-made templates
JS machinery allowed for pdf reporting
3.1.4 (2014-07-23)
LIMS-113: Allow percentage value for AS uncertainty
LIMS-1087: Prevent listing of empty categories
LIMS-1203: Fix Batch-AnalysisRequests query
LIMS-1207: LIMS-113 Allow percentage value for AS uncertainty
LIMS-1221: use folder icon for ARImports in nav
LIMS-1240: fix permissions for “Copy To New” in AR lists
LIMS-1330: handle duplicate of reference analysis
LIMS-1340: soft-cache validator results
LIMS-1343: Prevent sudden death if no version information is available
LIMS-1352: SamplingWorkflow not saved to sample
LIMS-334: Add Service/ExponentialFormatPrecision
LIMS-334: Added ExponentialFormatThreshold setting
LIMS-334: Allow exponential notation entry in numeric fields
LIMS-334: Exponent Format used for analysis Result
LIMS-334: Remove duplicate getFormattedResult code
LIMS-83: Update Method->calculation reference version when Calculation changes
Formula statements can be written on multiple lines for clarity.
Replace kss-bbb ajax-spinner with a quieter one
bika.lims.utils.log logs location url correctly
3.1.3 (2014-07-17)
Missing fixes from 3.1.2
LIMS-671: Preferred/Restricted client categories
LIMS-1251: Supply order permission error
LIMS-1272: Currency in Price Lists
LIMS-1310: Broken AnalysisProfile selector in AR Add form.
3.1.2 (2014-07-15)
LIMS-1292: UI fix Retracted ARs workfow: Warning msg on “full” retract.
LIMS.1287: UI fix Report parameter formatting
LIMS-1230: UI fix Livesearch’s box
LIMS-1257: UI fix Long titles in Analysis Profiles, Sample Points, etc.
LIMS-1214: UI fix More columns
LIMS-1199: UI fix Worksheet listing: better columns
LIMS-1303: jsi18n strings must be added to bika-manual.pot. i18ndude cannot find.
LIMS-1310: Filter SamplePoints by client in AR Template Edit View
LIMS-1256: Client objects included in AR-Add filters for Sample Point etc.
LIMS-1290: Allows Analyst to retract analyses, without giving extra permissions.
LIMS-1218: Slightly nicer monkey patch for translating content object ID’s and titles.
LIMS-1070: Accreditation text can be customised in bika_setup
LIMS-1245: off-by-one in part indicators in ar_add
LIMS-1240: Hide “copy to new” from Analyst users
LIMS-1059: Added worksheet rejection workflow
RejectAnalysis (Analysis subclass (has IAnalysis!)) workflow transition.
- Does not retract individual Analysis objects - instead, forces their state
back to “Received”, and assigns them onto newly created WS.
- Sets attributes on src and dst worksheets:
WS instance rejected worksheet attribute: .replaced_by = UID WS instance replacement worksheet attribute: .replaces_rejected_worksheet:UID
Fixed some i18n and encoding snags, and updated translations.
3.1.1 (2014-06-29)
Some bugs which only appear while running Windows, have been fixed.
LIMS-1281: Fix Restricted and Default categories in ar_add
LIMS-1275: Fix lax Aalyst permissions
LIMS-1301: jsonapi can set ReferenceField=””
LIMS-1221: Icon for ARImports folder in Navigation
LIMS-1252: AR Published Results Signature Block formatting
LIMS-1297: Update frontpage
3.1 (2014-06-23)
#oduct and Analysis specifications per AR
Incorrect published results invalidation workflow
Improved re-testing workflow
Adjustment factors on worksheets
Using ‘< n’ and ‘> n’ results values
Sample Storage locations
Sample Categories
Analysis Prioritisation
Bulk AR creation from file
Results reports inclusion of relevant QC results
Supply Inventory and Orders
JSON interface
Management Reports export to CSV
Enhancements to AR Batching
Enhancements to Results Reports
- Instrument management module
Calibration certificates, maintenance, Instrument QC
Method, Instrument and Analysis integrity
- Instrument interfaces
Agilent MS ‘Masshunter Quant’
Thermo Gallery
Foss Winescan FT 120, Auto
- Invoices
Per AR, Analysis per Invoice line.
Per Supply Order, inventory item per Invoice line
Invoices by email
Invoice ‘batches’ for selected time period, ARs aand Orders per Invoice line
Invoice batch export to accounts systems
#ice lists. Analysis Services and Supplies
3.1.3036 (2014-05-30)
Added two checboxes in BikaSetup > Security:
Allow access to worksheets only to assigned analysts (Y/N)
Only lab managers can create and amange new worksheets (Y/N)
** IMPORTANT NOTES **
The 3036 upgrade sets the above options to true by default, so after being upgraded, only the labmanagers will be able to manage WS and the analysts will only have access to the worksheets to which they are assigned. These defaults can be changed in BikaSetup > Security.
3.0 (2014-03-15)
Fix some out-dated dependencies that prevented the app from loading.
Development of the current bika 3.0 code has slowed, and our efforts have been focused on the 3.01a branch for some time.
3.0rc3.5.1 (2013-10-25)
Fix CSS AR Publication error
Fix error displaying client sample views
3.0rc3.5 (2013-10-24)
Requires Plone 4.3. For information on upgrading Plone, visit http://plone.org/documentation/manual/upgrade-guide
Fix a serious error saving Analysis results.
Improve upgrade handling in genericsetup profile
Fix errors in setupdata loader
Force UTF-8 encoding of usernames (imported client contacts can now login)
Removed outdated test setup data
Handle duplicate request values in bika_listing
ID server handles changes in ID schemes without error
Remove folder-full-view from front-page view
Updated workflow and permissions to prevent some silly errors
Add robot tests
Add default robots.txt
3.0rc3.2 (2013-06-28)
Fix site-error displaying upgraded instruments
Fix spinner (KSS is not always enabled)
Add extra save button in ar_add
Label Printing: “Return to list” uses browser history
Bold worksheet position indicators
Remove version.txt (use only setup.py for version)
3.0rc3.1 (2013-06-27)
Fix permission name in upgrade step
3.0rc3 (2013-06-25)
Many instrument management improvements! (Merge branch ‘imm’)
Removed ReferenceManufacturer (use of generic Manufacturer instead)
Removed ReferenceSupplier (use Supplier instead)
Improve service/calculation interim field widgets Allows service to include custom fields (without calculation selected)
Fix services display table categorisation in Analysis Specification views
Stop focusing the search gadget input when page load completes. (revert)
Limit access to Import tab (BIKA: Manage Bika)
New permission: “BIKA: Import Instrument Results”
New permission: “BIKA: Manage Login Details” - edit contact login details
Some late changes to better handle the updates to ID creation
Plone 4.3 compatibility (incomplete)
Use Collections as a base for Queries (incomplete)
Many many bugfixes.
3.0rc2.3 (2013-01-29)
Fix bad HTML
3.0rc2.2 (2013-01-28)
Fix an error during AR Publish
3.0rc2.1 (2013-01-21)
Fix bad HTML
Pin collective.js.jqueryui version to 1.8.16.9
3.0rc2 (2013-01-21)
Updated all translations and added Brazilian Portuguese
RecordsWidget: subfield_types include “date”
RecordsWidget: Automatic combogrid lookups
Added all bika types to Search and Live Search
Transition SamplePartition IDs to new format (SampleType-000?-P?
Always handle non-ASCII characters: UTF-8 encoding everywhere
Accept un-floatable (text) results for analyses
Hidden InterimFields in Calculations
Added InterimFields on AnalysisServices for overriding Calculation Interimfields.
Disable KSS inline-validation
Categorized analyses in AR views
Added remarks for individual analyses
Improved Javascript i18n handling
Improved default permissions
- New reports
Added ‘Analysis summary per department’ (merge of ‘Analyses lab department weekly’ and ‘Analyses request summary by date range’
Added ‘Analyses performed as % of total’ report
Added Analyses per lab department report
Added ‘Samples received vs. samples reported’ report
Added Daily Samples Received report
Many many bugfixes.
3.0rc1 (2012-10-01)
Removed Bika Health data from released egg
Remove remarks from portal_factory screens
Add Month/Year selectors to default datetime widget
ClientFolder default sorting.
Date formats for jquery datepicker
Don’t overwrite the Title specified in @@plone-addsite
Bug fixes
3.0rc1 (2012-09-25)
Requires Python 2.7 (Plone 4.2)
Add GNUPlot dependency
Added client sample points
Added Sampling Deviation selections
Added Ad-Hoc sample flag
Added Sample Matrices (Sampletype categorisation)
Added custom ResultsFooter field in bika setup
Added PDF Attachments to published results
Electronic signature included in Results and Reports
Login details form to create users for LabContacts
Sampling workflow is disabled by default
Methods are versioned by default
Methods are publicly accessible by default
Queries WIP
Reports WIP
Modified label layouts for easier customisation
Cleaned print styles
Use plonelocales for handling Date/Time formats
SMS and Fax setup items are disabled by default
2012-06-21
Partitioning & Preservation automation
Reports
Sample point & types relations in UI
AR template enhancements
Sample and AR layout improvements
Labels
Configuration logs
Faster indexing
JavaScript optimisation
Better IE compatibility
Set-up worksheet improvements
Updated translations
Workflow tweaks
Tweaks to Icons, Views & Lists
2012-04-23
Optional sampling and preservation workflows and roles.
Sample partitioning.
AR templates - Sample point & Sample type restrictions.
Reports - framework only. ‘Analysis per service’ shows what is planned.
Improved i18n handling, and updated strings from Transifex.
Numerous performance enhancements
Analysis Service & Method associations.
An improved Analysis Service pop-up window.
Sample Type and Sample Point relationship.
Currency selection from zope locales
Combined AR View and Edit tabs.
Re-factored AR ‘Add/Remove Analyses’ screen
Store the date of capture for analysis results
Append only remarks fields on more objects.
2012-01-23
Made Bika compatible with Plone 4.1
Sampler and Preserver roles, users and permissions
Sampling and Preservation workflows
Inactive and Cancellation Workflows
#e-preserved Containers
Automatic versioning for some bika_setup types
Analyst and Instrument on Worksheet templates
XLSX setup data loader
Sample disposal date based on date sampled, not date received.
Internal ID Server by default
user defined calculations and interim fields
Dry Matter results option does not appear until enabled in Site Setup
Accreditation portlet disabled until enabled in Site Setup
BikaListingView
New icons
(mostly) usable at 800x600
Column display toggles
Future dated samples and ARs
Accreditation template: i18n in locales/manual.pot/accreditation_*
intermediate workflow state for analyses requiring attachments
Labmanager has Site Administrator role (not Manager)
‘Indeterminate’ results
use portal_factory everywhere
working test suite
static resource directories
Merged BikaMembers types
CoordinateField/Widget
DurationField/Widget
CustomRecordsWidget
2.3.3 Bug fix release
Inclusion of BikaMembers 0.0.3. No changes to bika code, version bumped to facilitate release of new BikaMembers version.
2.3
Analysis categories introduced
Analysis service result restrictions - specification of possible results
Allow site and client specification of email and fax subject line content
Additional instrument/export formats: WinescanFT120, WinescanAuto, FIAStar and Bartelt’s data-collector
Export worksheet analyses to instruments
PDF as a result output option
SMS result output option
Result publication options synchronized and signatures added to emails
Email batching of query results conforms to result mailing
IDServer batching of unique id request
Optmization of worksheet searching on selection criteria
Extract tab added with extract for analysis services or profiles
Batch update of analysis service prices
German translation module added
Added a light query form which excludes analysis category and service
Batch size setting in analysis request lists
BikaMembers replaces UpfrontContacts
ATSchemaEditor removed
Significant performance improvements
Resolve client action conflicts
Sampled date validation
Drymatter formatting on output corrected
Correct default none workflows
Review portlet optimization
#icelist prints blank for analysis service with price not defined
2.2
Attachments permitted on analysis requests and analyses
Worksheet resequencing, and sort order for worksheet analysis selection
Worksheet deletion only available for open worksheets
Portlet to provide export of analysis services and analysis profiles
Requirement for unique analysis service names, analysis service keywords,
instrument import keywords and analysis profile keywords enforced.
Report headings and formats standardized accross different reports
AR import alternative layout provided with selection, including profiles
#ogress bar introduced for long running processes
2.1.1
Disposal Date for Samples and Retention Period per Sample Type added.
Various new search criteria added.
Standard Manufacturers introduced.
Labels for Standard Samples introduced.
“Print” and “Email” facilities introduced for lists of Standard Samples and Standard Stocks.
“Duplicate” facility for Analysis Services introduced.
Addresses added to top of emailed query results.
Labels for Samples and Analysis Requests changed.
Analysis Services can have multiple Methods.
Change log introduced for Methods.
Methods added to left navigation bar.
List of Methods included in pop-up for Analyses.
Documents may be uploaded for Methods.
2.1
Sample object and workflow introduced
Results specifications, lab and per client
Analysis profiles
Worksheet template engine
Interface to Bika Calendar
Import of analysisrequests from csv file
Export of results to csv file
#int as publication option
Lab Departments, lab contacts, and department manager introduced
Quality Control calculations. Control, blank and duplicate analyses.
QC graphs, normal distribution, trends and duplicate variation
Various analysis calculations allowed. Described by Calculation Type
Dependant Calcs introduced. Where an analysis result is calculated from
other analyses: e.g. AnalysisX = AnalysisY - Analysis Z
Dry matter result reporting. Results are reported on sample as received, and also as dry matter result on dried sample
Re-publication, Pre publication of individual results and per Client
Many reports including Turn around, analyses repeated and out of spec
1.2.1
Removed invoice line item descriptions from core code to allow skin integration
Create dummy titration values for analyses imported from instrument
More language translations
1.2.0
Statements renamed to Invoices
Jobcards renamed to Worksheets
New identification fields added to analysis request
Client Reference, Sample Type and Sample Point
Welcome page introduced
Late analyses list linked from late analyses portlet
Icon changes
Accreditation body logo and details added to laboratory info
Accreditation logo, disclaimers added throughout web site
Laboratory confidence level value data driven from laboratory info
Analyses methods provided as pop-up where analyses are listed
Titration factors and titration volumes added to analyses and worksheets
Measure of uncertainties introduced per analysis and intercept
Two new specialist roles created - verifier and publisher
Sample test data load script - load_sample_data.py
Implement generic instrument data import tool
Login portlet added
Modifications required to support interlab Permit analysis parent (sample) to be in ‘released’ state. Reference SampleID on AnalysisRequest-
1566324: Logged in page redirected to welcome page.
1573299: LiveSearch - Added permissions to InvoiceLineItem.
1573083: Status Drop Down - Invoicing
1551957: Contacts not visible to other contacts. Correct local owner role
1566334: position of ‘add new ar’ button changed to conform to other forms
1532008: query results sort order most recent first
1532770: Order default listing correction
1558458: Member discount data driven in messages on AR forms
1538354: SubTotal and VAT calculation on edit AR
1532796: AR edit - allow change of contact
1.1.3
This is a bug fix release. Migration from older versions has also been improved greatly.
Please note that AnalysisRequest now has a custom mutator that expects the title of the Cultivar, not the UID. This will impact anybode that customised the analysisrequed_add.cpy controller script and the validate_analysisrequest_add_form.vpy validation script.
1423182: IndexError on surfing to LIMS pages without being logged on
1423238: Orders - Dispatch date
1429992: AR edit tab - Cultivar uneditable
1429996: Cultivar names to allow numbers
1429999: Late analysis alert - ‘More…’ URL
1430002: Sample due alerts - ‘More…’ URL
1433787: Security - Clients
1434100: Search - Index & Attribute errors
1418473: Updated start-id-server.bat for Win2K & Win XP
1.1.2
1423205: Show logs to labmanager set-up
1291750: Added default ID prefixes for Order and Statement
1424589: Late analysis alert to be calulated on date received
1.1.1
Updated portlets with Plone 2.1 style definition list markup
1423179: Clients must not see JobCard links on Analysis Requests
1423182: IndexError on surfing to LIMS pages without being logged on
1423188: Site map - Clients should not have access to …
1423191: Link rot - ‘logged in’ page
1423193: Groups folder should not be shown
1423194: No ‘More…’ if there are less than 5
1423204: AR view - Missing tabs and status drop down
1423209: Schema Editor - Drop Down List Issue (Select)
1423234: Late Analysis alert shows for anonymous visitors
1423363: Report Analysis Totals
1423386: Email publication error
1.1.0
Made Bika compatibable with Plone 2.1
Added Spanish translation contributed by Luis Espinoza
Added Italian translation contributed by Pierpaolo Baldan
Added Dutch translation contributed by Joris Goudriaan
Added Portugese translation contributed by Nuno R. Pinhão
The schemas of Client, Contact, AnalysisRequest and Order can be edited in the through-the-web schema editor, ATSchemaEditorNG.
The maximum time allowed for the publication of results can now be set per analysis service. The portlet ‘skins/bika/portlet_late_analysis.pt’ has been added to alert lab users when analyses are late.
Analyses on an AnalysisRequest have a reference to a Jobcard, rendered as a hyperlink on the AnalysisRequest view.
A bug has been fixed where ‘not_requested’ analyses were checked on the AnalysisRequest edit form.
Enabled ‘changed_state’ folder button globally and disabled on AnalysisRequest and Jobcard.
1.0.1
Updated ‘skins/bika/date_components_support.py’ with latest version of script in Plone 2.0.5
Modified access to transitions in workflow scripts, normal attribute access seems to guarded since Zope 2.7.5.
Added CHANGES.txt and README.txt
Added windows batch script for ID server (scripts/start-id-server.bat)
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