shogen

Finding shortest genome segments that regulate metabolic pathways.

Project description

Installation

You can install shogen by running:

$ pip --user install shogen

Usage

Typical usage is:

$ shogen.py [options] genomefile metabolismfile catalysationfile queries

Options:
  -h, --help   show this help message and exit
  -k K, --k=K  Number of ranked  shortest genome segments (Default to 5)
  -l L, --l=L  maximum length of a genome segment (Default to 200)

Samples

Sample files for finding functional gene units in e. coli are available here:: genome.txt metabolism.txt catalyze.txt queries.txt

Project details

Release history Release notifications | RSS feed

1.4.3

Nov 10, 2014

This version

1.4.2

May 21, 2014

1.4.1

Mar 6, 2014

1.4

Mar 4, 2014

1.3

Jan 21, 2014

1.2

Aug 23, 2013

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