sourmash plugin to build venn diagrams - DEPRECATED. Use 'sourmash_plugin_betterplot' instead.
Project description
sourmash_plugin_venn: generate a simple Venn diagram for two sourmash sketches
This plugin is deprecated.
Please use the venn
command in
the betterplot
plugin
instead, as that plugin is maintained and supported as of August 2024.
Legacy documentation
Generate Venn diagrams showing overlaps between two sourmash sketches of DNA or protein sequences:
Examples
sourmash scripts venn examples/a.sig.gz examples/b.sig.gz -o a-b.png
sourmash scripts venn examples/a.sig.gz examples/b.sig.gz -o a-b.png --name1 A --name2 B
sourmash scripts venn examples/a.sig.gz examples/b.sig.gz examples/c.sig.gz -o a-b-c.png
sourmash scripts venn examples/a.sig.gz examples/b.sig.gz examples/c.sig.gz -o a-b-c.png --name1 A --name2 B --name3 C
Installation
pip install sourmash_plugin_venn
Dev docs
venn
is developed at https://github.com/sourmash-bio/sourmash_plugin_venn.
Testing
Run:
pytest tests
Generating a release
Bump version number in pyproject.toml
and push.
Make a new release on github.
Then pull, and:
python -m build
followed by twine upload dist/...
.
Project details
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