Spatial data format.
Project description
Work in progress ⚠
- The library is not ready. We aim at a beta release in the following months. If interested in a demo/early beta, please reach out to us.
- To get involved in the discussion you are welcome to join our Zulip workspace and/or our community meetings every second week; more info here.
- Links to the OME-NGFF specification: 0.4, 0.5-dev (tables), 0.5-dev (transformations and coordinate systems)
spatialdata
Getting started
Please refer to the documentation. In particular:
Installation
Check out the docs for more complete installation instructions. For now you can install spatialdata with:
pip install git+https://github.com/scverse/spatialdata.git@main
Contact
For questions and help requests, you can reach out in the scverse discourse. If you found a bug, please use the issue tracker.
Citation
t.b.a
You can cite the scverse publication as follows:
The scverse project provides a computational ecosystem for single-cell omics data analysis
Isaac Virshup, Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso, Ilia Kats, Mikaela Koutrouli, Scverse Community, Bonnie Berger, Dana Pe’er, Aviv Regev, Sarah A. Teichmann, Francesca Finotello, F. Alexander Wolf, Nir Yosef, Oliver Stegle & Fabian J. Theis
Nat Biotechnol. 2022 Apr 10. doi: 10.1038/s41587-023-01733-8.
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