Operations on SSSOM mapping tables

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Project links

Project description

Python Utilities for SSSOM

SSSOM (Simple Standard for Sharing Ontology Mappings) is a TSV and RDF/OWL standard for ontology mappings

WARNING: the export formats (json, rdf) of sssom-py are not yet finalised! Please expect changes in future releases!

See https://github.com/OBOFoundry/SSSOM

This is a python library and command line toolkit for working with SSSOM. It also defines a schema for SSSOM.

Documentation

See documentation

Deploy documentation

make sphinx
make deploy-docs

Schema

See the schema/ folder for source schema in YAML, plus derivations to JSON-Schema, ShEx, etc.

Testing

tox is similar to make, but specific for Python software projects. Its configuration is stored in tox.ini in different "environments" whose headers look like [testenv:...]. All tests can be run with:

$ pip install tox
$ tox

A specific environment can be run using the -e flag, such as tox -e lint to run the linting environment.

Outstanding Contributors

Outstanding contributors are groups and institutions that have helped with organising the SSSOM Python package's development, providing funding, advice and infrastructure. We are very grateful for all your contribution - the project would not exist without you!

Harvard Medical School

The INDRA Lab, a part of the Laboratory of Systems Pharmacology and the Harvard Program in Therapeutic Science (HiTS), is interested in natural language processing and large-scale knowledge assembly. Their work on SSSOM is funded by the DARPA Young Faculty Award W911NF2010255 (PI: Benjamin M. Gyori).

https://indralab.github.io

Project details

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Project links

Release history Release notifications | RSS feed

0.4.13

Nov 9, 2024

0.4.12

Oct 25, 2024

0.4.11

Jun 26, 2024

0.4.10

Jun 25, 2024

0.4.9

May 14, 2024

0.4.8

Apr 29, 2024

0.4.7

Apr 12, 2024

0.4.6

Apr 6, 2024

0.4.5

Mar 22, 2024

0.4.4

Feb 8, 2024

0.4.3

Jan 13, 2024

0.4.2

Dec 11, 2023

0.4.1 yanked

Oct 3, 2023

Reason this release was yanked:

more updates in the works

0.4.0

Dec 5, 2023

0.4.0rc1 pre-release

Nov 20, 2023

0.3.42 yanked

Oct 3, 2023

Reason this release was yanked:

updating minor version

0.3.41

Sep 5, 2023

0.3.40

Aug 11, 2023

0.3.39

Aug 7, 2023

0.3.38

Aug 7, 2023

0.3.37

Aug 7, 2023

0.3.37rc1 pre-release

Aug 7, 2023

0.3.36

Jul 27, 2023

0.3.35

Jul 10, 2023

0.3.34

Jun 30, 2023

0.3.33

Jun 26, 2023

0.3.33rc1 pre-release

Jun 20, 2023

0.3.32

Jun 19, 2023

0.3.31

Jun 1, 2023

0.3.30

Apr 28, 2023

0.3.29

Apr 18, 2023

0.3.28

Apr 13, 2023

0.3.27

Apr 12, 2023

0.3.26

Apr 2, 2023

0.3.25

Mar 17, 2023

0.3.24

Mar 17, 2023

0.3.23

Feb 24, 2023

0.3.22

Feb 6, 2023

0.3.21

Jan 26, 2023

This version

0.3.20

Jan 26, 2023

0.3.19

Dec 19, 2022

0.3.18

Dec 13, 2022

0.3.17

Oct 6, 2022

0.3.16

Aug 31, 2022

0.3.15

Aug 24, 2022

0.3.14

Aug 8, 2022

0.3.13

Jul 18, 2022

0.3.12

Jul 7, 2022

0.3.12.dev0 pre-release

Jun 30, 2022

0.3.11

May 10, 2022

0.3.10

May 3, 2022

0.3.9

Apr 29, 2022

0.3.8

Apr 7, 2022

0.3.8.dev0 pre-release

Feb 25, 2022

0.3.7

Feb 22, 2022

0.3.6.dev0 pre-release

Dec 8, 2021

0.3.3

Oct 21, 2021

0.3.2

Aug 31, 2021

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