studygovernor 7.0.0

Documentation

The Study Governor is documented at https://idsp-study-governor.readthedocs.io/

Setting up development environment for kubernetes

You need a number of tools to start developing for the Study Governor on kubernetes locally.

1. Docker: https://www.docker.com/

2. k3d: https://k3d.io

3. helm: https://helm.sh/

4. Tilt: https://tilt.dev/

Installation and operation instructions

1. Install mysql and libmysqlclient-dev (e.g. sudo apt-get install mysql-server libmysqlclient-dev)

2. Run python setup.py install (or python setup.py develop inside a virtualenv if developing)

3. Create the database in the following way:

`` # Go the mysql command line (add the -p if you have set a root password). $ sudo mysql (-p)

# Create user mysql> CREATE USER ‘studygovernor’@’localhost’ IDENTIFIED BY ‘blaat123’;

# Create database mysql> CREATE DATABASE studygovernor;

# Grant all permissions of the database to the user. mysql> GRANT ALL ON studygovernor.* TO ‘studygovernor’@’localhost’; ``

4. Run studygov-db-init to initialize the database.

Adding some stuff via REST

>>> sub = {'label': 'sub_001', 'date_of_birth': '2000-12-25'}
>>> requests.post('http://localhost:5000/api/v1/subjects', json=sub)
>>> exp = {'label': 'exp_001', 'subject': '/api/v1/subjects/1', 'scandate': datetime.datetime.now().isoformat()}
>>> requests.post('http://localhost:5000/api/v1/experiments', json=exp)
>>> requests.get('http://localhost:5000/api/v1/experiments/1/state')
>>> requests.put('http://localhost:5000/api/v1/experiments/1/state', json={'state': '/api/v1/states/3'})