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Compute distance between the two texts.

Project description

TextDistance logo

TextDistance logo

Build Status PyPI version Status Code size License

TextDistance – python library for comparing distance between two or more sequences by many algorithms.

Features:

  • 30+ algorithms

  • Pure python implementation

  • Simple usage

  • More than two sequences comparing

  • Some algorithms have more than one implementation in one class.

  • Optional numpy usage for maximum speed.

Algorithms

Edit based

Algorithm

Class

Functions

Hamming

Hamming

hamming

MLIPNS

Mlipns

mlipns

Levenshtein

Levenshtein

levenshtein

Damerau-Levenshtein

DamerauLevenshtein

damerau_levenshtein

Jaro-Winkler

JaroWinkler

jaro_winkler, jaro

Strcmp95

StrCmp95

strcmp95

Needleman-Wunsch

NeedlemanWunsch

needleman_wunsch

Gotoh

Gotoh

gotoh

Smith-Waterman

SmithWaterman

smith_waterman

Token based

Algorithm

Class

Functions

Jaccard index

Jaccard

jaccard

Sørensen–Dice coefficient

Sorensen

sorensen, sorensen_dice, dice

Tversky index

Tversky

tversky

Overlap coefficient

Overlap

overlap

Tanimoto distance

Tanimoto

tanimoto

Cosine similarity

Cosine

cosine

Monge-Elkan

MongeElkan

monge_elkan

Bag distance

Bag

bag

Sequence based

Algorithm

Class

Functions

longest common subsequence similarity

LCSSeq

lcsseq

longest common substring similarity

LCSStr

lcsstr

Ratcliff-Obershelp similarity

RatcliffObershelp

ratcliff_obershelp

Compression based

Normalized compression distance with different compression algorithms.

Classic compression algorithms:

Algorithm

Class

Function

Arithmetic coding

ArithNCD

arith_ncd

RLE

RLENCD

rle_ncd

BWT RLE

BWTRLENCD

bwtrle_ncd

Normal compression algorithms:

Algorithm

Class

Function

Square Root

SqrtNCD

sqrt_ncd

Entropy

EntropyNCD

entropy_ncd

Work in progress algorithms that compare two strings as array of bits:

Algorithm

Class

Function

BZ2

BZ2NCD

bz2_ncd

LZMA

LZMANCD

lzma_ncd

ZLib

ZLIBNCD

zlib_ncd

See blog post for more details about NCD.

Phonetic

Algorithm

Class

Functions

MRA

MRA

mra

Editex

Editex

editex

Simple

Algorithm

Class

Functions

Prefix similarity

Prefix

prefix

Postfix similarity

Postfix

postfix

Length distance

Length

length

Identity similarity

Identity

identity

Matrix similarity

Matrix

matrix

Installation

Stable

Only pure python implementation:

pip install textdistance

With extra libraries for maximum speed:

pip install textdistance[extras]

With all libraries (required for benchmarking and testing):

pip install textdistance[benchmark]

With algorithm specific extras:

pip install textdistance[Hamming]

Algorithms with available extras: DamerauLevenshtein, Hamming, Jaro, JaroWinkler, Levenshtein.

Dev

Via pip:

pip install -e git+https://github.com/orsinium/textdistance.git#egg=textdistance

Or clone repo and install with some extras:

git clone https://github.com/orsinium/textdistance.git
pip install -e .[benchmark]

Usage

All algorithms have 2 interfaces:

  1. Class with algorithm-specific params for customizing.

  2. Class instance with default params for quick and simple usage.

All algorithms have some common methods:

  1. .distance(*sequences) – calculate distance between sequences.

  2. .similarity(*sequences) – calculate similarity for sequences.

  3. .maximum(*sequences) – maximum possible value for distance and similarity. For any sequence: distance + similarity == maximum.

  4. .normalized_distance(*sequences) – normalized distance between sequences. The return value is a float between 0 and 1, where 0 means equal, and 1 totally different.

  5. .normalized_similarity(*sequences) – normalized similarity for sequences. The return value is a float between 0 and 1, where 0 means totally different, and 1 equal.

Most common init arguments:

  1. qval – q-value for split sequences into q-grams. Possible values:

    • 1 (default) – compare sequences by chars.

    • 2 or more – transform sequences to q-grams.

    • None – split sequences by words.

  2. as_set – for token-based algorithms:

    • True – t and ttt is equal.

    • False (default) – t and ttt is different.

Example

For example, Hamming distance:

import textdistance

textdistance.hamming('test', 'text')
# 1

textdistance.hamming.distance('test', 'text')
# 1

textdistance.hamming.similarity('test', 'text')
# 3

textdistance.hamming.normalized_distance('test', 'text')
# 0.25

textdistance.hamming.normalized_similarity('test', 'text')
# 0.75

textdistance.Hamming(qval=2).distance('test', 'text')
# 2

Any other algorithms have same interface.

Extra libraries

For main algorithms textdistance try to call known external libraries (fastest first) if available (installed in your system) and possible (this implementation can compare this type of sequences). Install textdistance with extras for this feature.

You can disable this by passing external=False argument on init:

import textdistance
hamming = textdistance.Hamming(external=False)
hamming('text', 'testit')
# 3

Supported libraries:

  1. abydos

  2. Distance

  3. jellyfish

  4. py_stringmatching

  5. pylev

  6. python-Levenshtein

  7. pyxDamerauLevenshtein

Algorithms:

  1. DamerauLevenshtein

  2. Hamming

  3. Jaro

  4. JaroWinkler

  5. Levenshtein

Benchmarks

Without extras installation:

algorithm

library

function

time

DamerauLeven shtein

jellyfish

damerau_le venshtein_ distance

0.00965 294

DamerauLeven shtein

pyxdamerau levenshtei n

damerau_le venshtein_ distance

0.15137 8

DamerauLeven shtein

pylev

damerau_le venshtein

0.76646 1

DamerauLeven shtein

textdist ance

DamerauLeve nshtein

4.13463

DamerauLeven shtein

abydos

damerau_le venshtein

4.3831

Hamming

Levenshtei n

hamming

0.00144 28

Hamming

jellyfish

hamming_di stance

0.00240 262

Hamming

distance

hamming

0.03625 3

Hamming

abydos

hamming

0.03839 33

Hamming

textdist ance

Hamming

0.17678 1

Jaro

Levenshtei n

jaro

0.00313 561

Jaro

jellyfish

jaro_dista nce

0.00518 85

Jaro

py_string matching

jaro

0.18062 8

Jaro

textdist ance

Jaro

0.27891 7

JaroWinkler

Levenshtei n

jaro_winkl er

0.00319 735

JaroWinkler

jellyfish

jaro_winkl er

0.00540 443

JaroWinkler

textdist ance

JaroWinkler

0.28962 6

Levenshtein

Levenshtei n

distance

0.00414 404

Levenshtein

jellyfish

levenshtein _distance

0.00601 647

Levenshtein

py_string matching

levenshtein

0.25290 1

Levenshtein

pylev

levenshtein

0.56918 2

Levenshtein

distance

levenshtein

1.15726

Levenshtein

abydos

levenshtein

3.68451

Levenshtein

textdist ance

Levenshtein

8.63674

Total: 24 libs.

Yeah, so slow. Use TextDistance on production only with extras.

Textdistance use benchmark’s results for algorithm’s optimization and try to call fastest external lib first (if possible).

You can run benchmark manually on your system:

pip install textdistance[benchmark]
python3 -m textdistance.benchmark

TextDistance show benchmarks results table for your system and save libraries priorities into libraries.json file in TextDistance’s folder. This file will be used by textdistance for calling fastest algorithm implementation. Default libraries.json already included in package.

Test

You can run tests via tox:

sudo pip3 install tox
tox

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