Python API for efficient storage and retrieval of single-cell data using TileDB
Project description
Overview
This is a POC Python implementation of the proposed Unified Single-cell Data Model.
This branch conforms to this version of the specification -- for the latest version please see the main branch of this repository.
Installation
Using pip
This code is hosted at PyPI, so you can do
python -m pip install tiledbsoma
To install a specific version:
python -m pip install git+https://github.com/single-cell-data/TileDB-SOMA.git@0.0.6#subdirectory=apis/python
To update to the latest version:
python -m pip install --upgrade tiledbsoma
From source
- This requires
tiledb(see ./setup.cfg for version), in addition to other dependencies in setup.cfg. - Clone this repo
cdinto your checkout and thencd apis/pythonpython -m pip install .- Or, if you wish to modify the code and run it,
python setup.py develop - Optionally, if you prefer, you can run that inside
venv:
python -m venv venv
. ./venv/bin/activate
python -m pip install .
- In either case:
python -m pytest tests
Status
Please see https://github.com/single-cell-data/TileDB-SOMA/issues.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distributions
No source distribution files available for this release.See tutorial on generating distribution archives.
Built Distribution
File details
Details for the file tiledbsoma-0.1.22-py3-none-any.whl.
File metadata
- Download URL: tiledbsoma-0.1.22-py3-none-any.whl
- Upload date:
- Size: 70.4 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.2 CPython/3.9.16
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 10cc09dba03b5a948e9da66f3b0ddbdfc458cc75efbefeaac7b49a395d59034f |
|
| MD5 | 4065821ef1f39a6c93c356f5ae9aa728 |
|
| BLAKE2b-256 | e07e6990c389e404fd2c9a81ea2a6aacb2d2d384986a28aa0f60970f2c0ca7a0 |
