Pipeline management software for clusters.
Project description
Toil is a scalable, efficient, cross-platform (Linux & macOS) pipeline management system, written entirely in Python, and designed around the principles of functional programming. It supports running workflows written in either Common Workflow Language (CWL) 1.0-1.2 or Workflow Description Language (WDL) 1.0-1.1, as well as having its own rich Python API for writing workflows against. It supports running workflows locally on your system (e.g. a laptop), on an HPC cluster, or in the cloud.
Check the website for a description of Toil and its features.
Full documentation for the latest stable release can be found at Read the Docs.
Please subscribe to low-volume announce mailing list so we keep you informed
Google Groups discussion forum
See our occasional blog for tutorials.
Use biostars channel for discussion.
Notes:
Toil moved from https://github.com/BD2KGenomics/toil to https://github.com/DataBiosphere/toil on July 5th, 2018.
Toil dropped Python 2.7 support on February 13, 2020 (the last working py2.7 version is 3.24.0).
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