Automatic feature detection and quantification for in-vitro NETosis experiments plugin for PartSeg
Project description
Trapalyzer
Trapalyzer is a PartSeg and napari plugin for automatic feature detection and quantification for in-vitro NET release studies.
Installation
Trapalyzer is a plug-in for the PartSeg image processing. To use Trapalyzer,
you first need to install PartSeg.
If you use Windows, you can simply download and unpack the PartSeg.zip file -
no further installation needed. If you use Linux with a working Python
distribution, we recommend installing PartSeg by running
pip install PartSeg[all] in the command line.
After you have installed PartSeg, you can install Trapalyzer:
- If you install PartSeg from prebuild binaries (from zip) then you need to download
this plugin from release page and unpack it to
pluginsdirectory in PartSeg folder. - If you install PartSeg using pip or conda then you can install this plugin using pip
pip install Trapalyzer
Usage examples
In the Tutorial directory you will find instructions on how to use Trapalyzer to analyze an example data set of fluorescence microscopy images.
Download files
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Source Distribution
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