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Project description
xarray backend for Selafin formats
Supports lazy loading by default.
Dev guide
To have the backend working in xarray, follow these steps:
pip install xarray-selafin
Read Selafin
import xarray as xr
ds = xr.open_dataset("tests/data/r3d_tidal_flats.slf", engine="selafin")
ds = xr.open_dataset("tests/data/r3d_tidal_flats.slf", lang="fr", engine="selafin") # if variables are in French
<xarray.Dataset>
Dimensions: (time: 17, node: 648, plan: 21)
Coordinates:
x (node) float32 ...
y (node) float32 ...
* time (time) datetime64[ns] 1900-01-01 ... 1900-01-02T20:26:40
Dimensions without coordinates: node, plan
Data variables:
Z (time, node, plan) <class 'numpy.float64'> ...
U (time, node, plan) <class 'numpy.float64'> ...
V (time, node, plan) <class 'numpy.float64'> ...
W (time, node, plan) <class 'numpy.float64'> ...
MUD (time, node, plan) <class 'numpy.float64'> ...
Attributes:
title: Sloped flume Rouse profile test
language: en
float_size: 4
endian: >
params: (1, 0, 0, 0, 0, 0, 21, 5544, 0, 1)
ipobo: [ 1 264 263 ... 5411 5412 5413]
ikle2: [[155 153 156]\n [310 307 305]\n [308 310 305]\n ...\n [537 ...
ikle3: [[ 155 153 156 803 801 804]\n [ 310 307 305 ...
variables: {'Z': ('ELEVATION Z', 'M'), 'U': ('VELOCITY U', 'M/S'), 'V':...
date_start: (1900, 1, 1, 0, 0, 0)
Indexing
ds_last = ds.isel(time=-1) # last frame
Manipulate variables
ds = ds.assign(UTIMES100=lambda x: x.U * 100) # Add a new variable
# ds.attrs["variables"]["UTIMES100"] = ("UTIMES100", "My/Unit") # To provide variable name and unit (optional)
ds.drop_vars(["W"]) # Remove variable `VELOCITY W`
Write Selafin
ds.selafin.write("output_file.slf")
DataSet content
Dimensions
- time
- node
- plan (only in 3D)
Coordinates
Coordinate | Description |
---|---|
x | East mesh coordinates |
y | North mesh coordinates |
time | Datetime serie |
Attributes
All attributes are optional except ikle2
:
Attribute | Description | Default value |
---|---|---|
title | Serafin title | "" (empty string) |
language | Language for variable detection | "en" |
float_size | Float size | 4 (single precision) |
endian | File endianness | ">" |
params | Table of integer parameters | (can be rebuilt) |
ikle2 | Connectivity table in 2D (1-indexed) | - |
ikle3 | Connectivity table in 3D (1-indexed, only in 3D, optional) | (can be rebuilt from 2D) |
variables | Dictionary with variable names and units (key is variable abbreviation) | - |
date_start | Starting date with integers (year to seconds) | (from first time serie) |
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