Lon

terra-notebook-utils

Last released Sep 3, 2024

Utilities for the Terra notebook environment.

toil-batch-system-tes

Last released Jul 1, 2024

A TES batch system plugin for Toil

bgzip

Last released Jun 30, 2024

Utilities working with blocked gzip streams.

toil

Last released May 21, 2024

Pipeline management software for clusters.

braingeneers

Last released May 13, 2024

Braingeneers Python utilities

getm

Last released May 24, 2023

Download data from URLs quickly, with integrity

xsamtools

Last released Jun 2, 2022

Lightly modified versions of samtools, htslib, and bcftools.

terra-pandas

Last released Feb 10, 2021

Tools work with Terra data tables in Pandas

herzog

Last released Dec 3, 2020

Generate Jupyter notebooks.

gs-chunked-io

Last released Oct 21, 2020

Streaming read/writes to Google Storage blobs with ascynchronous buffering.

toil-rnaseq

Last released Dec 6, 2018

UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq workflow

toil-lib

Last released Apr 26, 2017

A common library for functions and tools used in toil-based pipelines

toil-scripts

Last released Dec 2, 2016

A repository of genomic workflows developed by the UCSC Computational Genomics lab